Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00005237 |
| length | 1188 |
| RNA type | mRNA |
| GC content | 0.66 |
| exon number | 3 |
| gene id | AMCG00005237 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030140.1 |
| NCBI id | CM030140.1 |
| chromosome length | 22460246 |
| location | 19709336 ~ 19711528 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0048747 | muscle fiber development | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0001756 | somitogenesis | biological_process |
| GO:0007368 | determination of left/right symmetry | biological_process |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU184058 | lncRNA | upstream | 116242 | 19592750 ~ 19593094 (+) | True | G146307 |
| TU184057 | lncRNA | upstream | 123680 | 19585448 ~ 19585656 (+) | True | G146306 |
| TU184055 | lncRNA | upstream | 133762 | 19573323 ~ 19575574 (+) | True | G146304 |
| TU184054 | lncRNA | upstream | 139333 | 19569473 ~ 19570003 (+) | True | G146303 |
| TU183999 | lncRNA | upstream | 228738 | 19475139 ~ 19480598 (+) | False | AMCG00005232 |
| TU184126 | lncRNA | downstream | 48624 | 19760152 ~ 19760791 (+) | True | G146350 |
| TU184234 | lncRNA | downstream | 295888 | 20007416 ~ 20011135 (+) | True | G146442 |
| TU184248 | lncRNA | downstream | 312645 | 20024173 ~ 20026061 (+) | True | G146450 |
| TU184288 | lncRNA | downstream | 396574 | 20108102 ~ 20109541 (+) | True | G146486 |
| TU184340 | lncRNA | downstream | 470826 | 20182354 ~ 20184643 (+) | False | G146519 |
| AMCG00005239 | mRNA | upstream | 5019 | 19701463 ~ 19704317 (+) | True | AMCG00005239 |
| AMCG00005231 | mRNA | upstream | 145250 | 19552463 ~ 19564086 (+) | True | AMCG00005231 |
| AMCG00005232 | mRNA | upstream | 178883 | 19475285 ~ 19530453 (+) | True | AMCG00005232 |
| AMCG00005217 | mRNA | upstream | 593642 | 19092227 ~ 19115694 (+) | True | AMCG00005217 |
| AMCG00005197 | mRNA | upstream | 882844 | 18824891 ~ 18826492 (+) | True | AMCG00005197 |
| AMCG00005238 | mRNA | downstream | 30825 | 19742353 ~ 19755790 (+) | True | AMCG00005238 |
| AMCG00005235 | mRNA | downstream | 50640 | 19762168 ~ 19771973 (+) | True | AMCG00005235 |
| AMCG00005236 | mRNA | downstream | 63951 | 19775479 ~ 19783604 (+) | True | AMCG00005236 |
| AMCG00005246 | mRNA | downstream | 105312 | 19816840 ~ 19836486 (+) | True | AMCG00005246 |
| AMCG00005248 | mRNA | downstream | 126234 | 19837762 ~ 19845316 (+) | True | AMCG00005248 |
| TU184056 | other | upstream | 129529 | 19579573 ~ 19579807 (+) | True | G146305 |
| TU183561 | other | upstream | 1937811 | 17765257 ~ 17771525 (+) | True | G145932 |
| TU183002 | other | upstream | 4324724 | 15384243 ~ 15384612 (+) | False | AMCG00005105 |
| TU182286 | other | upstream | 6928166 | 12780580 ~ 12781170 (+) | True | G144940 |
| TU181952 | other | upstream | 8045968 | 11662681 ~ 11663368 (+) | True | G144677 |
| TU184341 | other | downstream | 470826 | 20182354 ~ 20184643 (+) | True | G146519 |
| TU184347 | other | downstream | 561985 | 20273513 ~ 20279786 (+) | False | AMCG00005272 |
| TU184405 | other | downstream | 810121 | 20521649 ~ 20524819 (+) | True | G146575 |
| TU184436 | other | downstream | 950398 | 20661926 ~ 20670169 (+) | True | G146596 |
| TU184446 | other | downstream | 987958 | 20699486 ~ 20702404 (+) | True | AMCG00005286 |
