RNA id: AMCG00005239



Basic Information


Item Value
RNA id AMCG00005239
length 1047
RNA type mRNA
GC content 0.68
exon number 4
gene id AMCG00005239
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19701463 ~ 19704317 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCGCCCCCGGGGAGCAGTCTCGACCCGTCTCCCGAGCCCAAGCCGGTCCGGACCCCGAAATGCGCCCGCTGCCGCAACCACGGCTACACGGTGCAGCTCAAGGGCCACTCGGGGAAGTGCCGCTTCTTCTGCTGCCTGTGCTGGAAGTGCTCCCTCATCACCGAGAGGACCAAGATCATGGCCACCCAGAGGCGCATCAAGAGGCTGGCAAAGGAGGAGCCGGCTGATCCGCCTCGACACCCCGGGGGCCACGGCGACCATGCGGGCGCGGTGGGAGTCCAGGGCGGCGGTCAGGGCGACGCACCCCGGCCGGGCTCCGTGATCAGGCGCGACCCAGGGAGGGCGGCACTGGGGGGCCCGCCGAGCCCCGGGGCTGTGCTGGGCGACCCCCGACTGCAGTCCAGCCACGGCCGCGGTGGCAGCGGGGGAAGGGGCGGCGGGCTGGGCGTGGAGGGCCACCAGCTCCGCGGCAGCCCGTGGGGCTCATTATTAGGCAGGGATTTGCAAGACAGCGCCTGCCAGGTGCTGGGAAGACACCCTCCTCATTTCCCTAAAGATTACGTCATCGCCGAGGTCTCCCAGCGAGAGATGTACCCCGGCGAGGTGCTGAGCGTGCCGTTCCCCGTGAAGCTGTACTCGCGCTTCCCCGGCGGCTGCTCCTGCCAGACCATCTTGGTCAACGTGCCGCCCGGCCCAGCGCCATTCGAGGAGCCCCCCGTGCCAGCCGGCTTCCCGCCCTTACAGCCGGGCAGCGTGCCGTACTGCCCCGAGTCCACACAGGTCAGTGAGCCGCGTCTCTTTCCGTCTTCTGAACTGAACAGTCGTGCACTCGAAGCCACAGACTATGATGGCCGAGTTCCCTTCTTCCCAGCCCAGTCGGCACGGCCCGGAGCCTCCCCGGACAGACTGCAGCCCCTGGGACAATACCCCTACCCCGCGCCCGTCCTgcccagagagagggagcaggccGCAGCTCCACAAGGAAGCCCCGATTCCGACGTGATCTCAGTGGGAACCGAGACGTCCTCTCAGGAAAACGTGTAA

Function


GO: NA

KEGG:

id description
K19492 DMRT6, DMRTB; doublesex- and mab-3-related transcription factor 6

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU184058 lncRNA upstream 108369 19592750 ~ 19593094 (+) True G146307
TU184057 lncRNA upstream 115807 19585448 ~ 19585656 (+) True G146306
TU184055 lncRNA upstream 125889 19573323 ~ 19575574 (+) True G146304
TU184054 lncRNA upstream 131460 19569473 ~ 19570003 (+) True G146303
TU183999 lncRNA upstream 220865 19475139 ~ 19480598 (+) False AMCG00005232
TU184126 lncRNA downstream 55835 19760152 ~ 19760791 (+) True G146350
TU184234 lncRNA downstream 303099 20007416 ~ 20011135 (+) True G146442
TU184248 lncRNA downstream 319856 20024173 ~ 20026061 (+) True G146450
TU184288 lncRNA downstream 403785 20108102 ~ 20109541 (+) True G146486
TU184340 lncRNA downstream 478037 20182354 ~ 20184643 (+) False G146519
AMCG00005231 mRNA upstream 137377 19552463 ~ 19564086 (+) True AMCG00005231
AMCG00005232 mRNA upstream 171010 19475285 ~ 19530453 (+) True AMCG00005232
AMCG00005217 mRNA upstream 585769 19092227 ~ 19115694 (+) True AMCG00005217
AMCG00005197 mRNA upstream 874971 18824891 ~ 18826492 (+) True AMCG00005197
AMCG00005199 mRNA upstream 880040 18815029 ~ 18821423 (+) True AMCG00005199
AMCG00005237 mRNA downstream 5019 19709336 ~ 19711528 (+) True AMCG00005237
AMCG00005238 mRNA downstream 38036 19742353 ~ 19755790 (+) True AMCG00005238
AMCG00005235 mRNA downstream 57851 19762168 ~ 19771973 (+) True AMCG00005235
AMCG00005236 mRNA downstream 71162 19775479 ~ 19783604 (+) True AMCG00005236
AMCG00005246 mRNA downstream 112523 19816840 ~ 19836486 (+) True AMCG00005246
TU184056 other upstream 121656 19579573 ~ 19579807 (+) True G146305
TU183561 other upstream 1929938 17765257 ~ 17771525 (+) True G145932
TU183002 other upstream 4316851 15384243 ~ 15384612 (+) False AMCG00005105
TU182286 other upstream 6920293 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 8038095 11662681 ~ 11663368 (+) True G144677
TU184341 other downstream 478037 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 569196 20273513 ~ 20279786 (+) False AMCG00005272
TU184405 other downstream 817332 20521649 ~ 20524819 (+) True G146575
TU184436 other downstream 957609 20661926 ~ 20670169 (+) True G146596
TU184446 other downstream 995169 20699486 ~ 20702404 (+) True AMCG00005286

Expression Profile