RNA id: AMCG00005240


Basic Information

Item Value
RNA id AMCG00005240
length 717
RNA type mRNA
GC content 0.54
exon number 7
gene id AMCG00005240
representative False

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19758232 ~ 19761446 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACGTTATGGAAGAGGACGACGCACAGTTGGGTTACGAGTCCGAGGAAGAAAGGGAGTTGTCAGATGGCGAGCTCCAAGAAGCGTTCAGCAAAGGGCTGCTGAAACCTGGCATGAACATCCCTCTGGAGCCCAAGACGACCGTCAACAACGTGGAGGCCATGAAGATGTGTTTAGAAGACTTCAAAAAGGACCTGCCCTGGGTGGAGAGGCTGGACCTGACGAACTTGCCGGCTCCGGACATGGCGGCCAAAGCGGAGGGGAAGACGGTGGCACAGGAGAGCAAAGAGCTCAGCACCGAGGACGACTTCCAGAGAGAGATGTTCTTttacCGCCAGGCCCAAGCAACCGTCCTGCTGGCATTGCCACGCTTACAGAAGTTGAACATTGCCACCAAGAGGCCAGAGGACTACTTTGCTGAGATGGCCAAGACTGACCAGCAGATGCAAAAGATCAGAACAAAACTGCTGGCCAAGCAGAGCGCTGCCGAGAAGTCGGAGAAGGCCAAGAAACTGCGAGAGCAAAGGAAGTTCAGCAAGAAGGTCCAGACGGAGGTCTTGCAAAAACGACAGAAGGAGAAGAAAGCCATGATGACGGCGGTAAAGAAATATCAGAAAGGGATGACTGACAAGCTGGACTTCCTGGATGGAGATCAGGAAAAGGGCAAGAAGGGGGGAGCTACTGCGCCAAAGGCAGCCATGAATAAAAAGGGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184124 lncRNA downstream 1336 19756247 ~ 19757237 (-) True G146348
TU184123 lncRNA downstream 3829 19754196 ~ 19754744 (-) True G146347
TU184074 lncRNA downstream 26456 19704004 ~ 19732117 (-) True G146322
TU184066 lncRNA downstream 147568 19610766 ~ 19611005 (-) True G146315
TU183990 lncRNA downstream 293598 19464007 ~ 19464975 (-) True G146257
TU184135 lncRNA upstream 10435 19771772 ~ 19774991 (-) True G146358
TU184261 lncRNA upstream 288779 20050116 ~ 20052921 (-) False G146461
TU184262 lncRNA upstream 288779 20050116 ~ 20051755 (-) True G146461
TU184270 lncRNA upstream 301212 20062549 ~ 20063413 (-) True G146469
TU184290 lncRNA upstream 342289 20103626 ~ 20107827 (-) True AMCG00005263
AMCG00005241 mRNA downstream 17208 19726944 ~ 19741365 (-) True AMCG00005241
AMCG00005229 mRNA downstream 89521 19664101 ~ 19669052 (-) True AMCG00005229
AMCG00005230 mRNA downstream 130937 19623255 ~ 19627636 (-) True AMCG00005230
AMCG00005228 mRNA downstream 158290 19575236 ~ 19600283 (-) True AMCG00005228
AMCG00005233 mRNA downstream 228891 19523812 ~ 19529682 (-) True AMCG00005233
AMCG00005250 mRNA upstream 23537 19784874 ~ 19799356 (-) True AMCG00005250
AMCG00005249 mRNA upstream 38397 19799734 ~ 19805056 (-) True AMCG00005249
AMCG00005251 mRNA upstream 85454 19846791 ~ 19855209 (-) True AMCG00005251
AMCG00005252 mRNA upstream 96521 19857858 ~ 19878152 (-) True AMCG00005252
AMCG00005243 mRNA upstream 145749 19907086 ~ 19916367 (-) True AMCG00005243
TU184064 other downstream 185255 19570059 ~ 19573318 (-) True G146313
TU183873 other downstream 742910 19014547 ~ 19015663 (-) False AMCG00005214
TU182803 other downstream 4790950 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 6421827 13336209 ~ 13336746 (-) True G145046
TU182157 other downstream 7602195 12154125 ~ 12156378 (-) True AMCG00005011
TU184245 other upstream 259373 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 259373 20020710 ~ 20023507 (-) False AMCG00005256
TU184357 other upstream 513054 20274391 ~ 20279746 (-) True G146532
TU184470 other upstream 848017 20609354 ~ 20610643 (-) True G146618
TU184860 other upstream 1983539 21744876 ~ 21745453 (-) True G146938

Expression Profile