RNA id: AMCG00005243


Basic Information

Item Value
RNA id AMCG00005243
length 2766
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00005243
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19907086 ~ 19916367 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACATTAGTCCTGTCGTGCCTTTCAAACCACGCACACcttccacagacagacacagatccTGTGTGGATATTACCCCTGCCACCATACTTTCCTAGAAGAAACAAGAGTGCCTGTCATCTCTGTGCTCTGTGGATTAATGTGCCACACTATCATTTGCCTTCTCTTTAATTAAACTTATATCGATGTTGTCATCATGCAGTCGTTTATAACCAGCCCCGGGGAGCTCCAGCGCAATGAAAACAGTTGAAACTTCGGCGGGTGTGACTTGCCGGTTTTACTCTTCTTGTGCTGGGATTGTGGGAGGGATTGCGAGCCGGGATGAGCGCACAGTGCAGCGGCTACCGCAGCGCGGAGGACCGGCTGGTCAGCGGCTTCACCTGTCCGACCCCGGGGGCCGACGCCGGGGCTGTCTACTGCTGTGGCTTCAACGATATCAAGTACTGCTGCGATGACCCCAACAGCTTCTTCCCCTATGAATATGCGTACATGTGGTGGCTGAGTGTCGGGGCTCTGGTGGGCCTGTCCATCGCAGCTGTGGTCTTGCTGGCGTTCATCATCACTGTGTGCGTCCTTTGCTACCTCTTCATTGCCACCAAGCCCAGCCGGCTGGACAATGGACTTCCCCTGCGAGCTCCAGGTGCGGACCTCAGCGCTCTGGAGGGCCCCAGTCACTCCACGGCCCCGACGGGCCCCCAGGGCTTCCGCAAGAACTTCCTGAGCCGCAAGCTGGACTGCGACAACCAGCCCCCCGAACCCGACCGGCTCTTTCAGCGGTGCTTCATGGCCACAGTGACCACCATCAACGTGGAGGGGCCCTCCTGAGGAACTGACGGACTCTCTCACTCTAATTTAGTTTTATCTTCCTGCTGTGGGCATTCTGAACCTTCTCCTGCTTTCCACAGCTCTACTTATTGATGTACTTACTTTCTTGTGAGAActgcagatgttttattttctgtcctcTTCTAAAGACCAGCCTCCTGGAGCGCGCTTTATTCCTCAAGGGCTATGTCTCCTCGGTGAAGTCCAAGGCAGCGGTGCTCATAGCCGCGGTCTAACGCCAAGCTGAGCCGCCGGTCCTCTGAAAGGAAACTCAGCCAAAGAATAACAGCTCTGTACCGCGGTGTCAGCGTAGCGATCTGAGAAGGCTTTGTGGTTCCCTTTCATATGGACTACAGAAATCAAGTCCTTTTCCTCAAGTGTAAGTAGTAAATGGTATGAGACAAAATGTCTCTGAAAATGTTGAACTGGACTGAGGTTAAGGAGTAATCATTTCTCACATGGAAACCCTTAATGAAATGGCCAATTAAACTGTGTCTGCAAGAACACCTGCCAAAGCAACACTGAAGTGCCCTTGTTCCCTCACCGTCTCGGGCAAACGCCGAAATGCTGGCACACACACATGGGTGCGCAGGCAGGCGAAGGCTTTGAGCTTCGTGTCTTTGTATTGAAATGCTCCAGACCAGCGTGAGTCTCTTGCTAATGATGCAGCCCCTGATGTTTACAAATCAATGTGTCTGCTTTTTCCCCCCATGCATATTTCTGCGTATTTTGTGatgatttaaaaagtttaaaacacaaatcaagcACTGTTAGTGACCGTTTTCCTTTTTAAGCAAATGGTATTAAAGGTTTTTGAGGAGTTGAGAAGGACCACAGTccctggggagagagaaaggagggcACAATCATATCAACGCACAGTCACAGCCCTTATTGCCGAGCTCTCGTTCATCTCTCAACGGCTGTGGGATTGCTAATAACCGAGGTTTATTTGTTAGCAGATCCGGCTGTATAAAATCACGCTCAAATAATCGAACCTCTTTTTGAAATAAGCATGTGACTGATAAAAAGGGGAGAAGCTGTCGATTTAATGCCGAgatttatatgtgtgtgcgtgtctgtatgTCTGCCCATGGTTATGCATTTCCTACTTGGATTAAGGTTCctgttgtatgtattttaaatgaccaaggtctgtctgtctccttttCGAAACATATTCAGCacatcctgtctgtctgtctgtcgatGTCTGTGGCAGTGCCCTGTAATGGTTATGGAGAATAATGGGATTTTGCAAAGTTGGAAGTTGACAGAATGGAAAATGAATTTCTTTGAAAGTGATTAGGCCTCCGTGTCTAACTCATTCTGCATCGTCGTGTGGGGAAGCACTAGTCGTCCAGAGTTTATAACTTACAGATATTACAACTCCCTCGTCGCCTCAAGCTGGCTGAAGGAATTGTAAAGTTTAATTCCTCGgtattaaacaaaatcattgaTCAGACCAGGGGATTTGAAGACCGCGGCACCGCAGAGCATGCCCTGCATCCAAACCTGCTCCagccttcttaaaaaaaaaacagaacagaaagaaaaacatattcagGCCTGTAAGGTATTGCTGTTCTCAGACAGGCTGTAATATTTATCAGATTGTAAGGTATTGGTGAGGTTCTTATGAGTCCAAAACATGCATAacttttcttcttcatcttcatcatcttcAACCTATATTGATTCACTACTGGATGAGGGCCTCCCCAGCTTACTTCAGTTTATATTTTCCCTCTTCtgtgtcacacctgcaaagccTGTTATTTCATATTCTCCTCTTTCATGTGGTCATCTTCAAGGTCTTCTCATcttttgggatccatttgatagttTCGATCTGCTCTTCCTGCAATGTGTCTGACTCATTGCcatttcaataatatatatatatataattccattCCTGAATCAAGAAAGGAAGCCATTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184135 lncRNA downstream 132095 19771772 ~ 19774991 (-) True G146358
TU184124 lncRNA downstream 149849 19756247 ~ 19757237 (-) True G146348
TU184123 lncRNA downstream 152342 19754196 ~ 19754744 (-) True G146347
TU184074 lncRNA downstream 174969 19704004 ~ 19732117 (-) True G146322
TU184066 lncRNA downstream 296081 19610766 ~ 19611005 (-) True G146315
TU184261 lncRNA upstream 133749 20050116 ~ 20052921 (-) False G146461
TU184262 lncRNA upstream 133749 20050116 ~ 20051755 (-) True G146461
TU184270 lncRNA upstream 146182 20062549 ~ 20063413 (-) True G146469
TU184290 lncRNA upstream 187259 20103626 ~ 20107827 (-) True AMCG00005263
TU184289 lncRNA upstream 191758 20108125 ~ 20109530 (-) True G146487
AMCG00005252 mRNA downstream 28934 19857858 ~ 19878152 (-) True AMCG00005252
AMCG00005251 mRNA downstream 51877 19846791 ~ 19855209 (-) True AMCG00005251
AMCG00005249 mRNA downstream 102030 19799734 ~ 19805056 (-) True AMCG00005249
AMCG00005250 mRNA downstream 107730 19784874 ~ 19799356 (-) True AMCG00005250
AMCG00005240 mRNA downstream 145749 19758573 ~ 19761337 (-) False AMCG00005240
AMCG00005257 mRNA upstream 65167 19981534 ~ 19994664 (-) True AMCG00005257
AMCG00005256 mRNA upstream 82800 19999167 ~ 20023496 (-) True AMCG00005256
AMCG00005259 mRNA upstream 107807 20024174 ~ 20026705 (-) True AMCG00005259
AMCG00005258 mRNA upstream 114202 20030569 ~ 20043343 (-) True AMCG00005258
AMCG00005263 mRNA upstream 187259 20103626 ~ 20107723 (-) False AMCG00005263
TU184128 other downstream 145640 19758232 ~ 19761446 (-) True AMCG00005240
TU184064 other downstream 333768 19570059 ~ 19573318 (-) True G146313
TU183873 other downstream 891423 19014547 ~ 19015663 (-) False AMCG00005214
TU182803 other downstream 4939463 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 6570340 13336209 ~ 13336746 (-) True G145046
TU184245 other upstream 104343 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 104343 20020710 ~ 20023507 (-) False AMCG00005256
TU184357 other upstream 358024 20274391 ~ 20279746 (-) True G146532
TU184470 other upstream 692987 20609354 ~ 20610643 (-) True G146618
TU184860 other upstream 1828509 21744876 ~ 21745453 (-) True G146938

Expression Profile