Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00005245 |
| length | 1218 |
| RNA type | mRNA |
| GC content | 0.56 |
| exon number | 10 |
| gene id | AMCG00005245 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030140.1 |
| NCBI id | CM030140.1 |
| chromosome length | 22460246 |
| location | 19855589 ~ 19858614 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0006397 | mRNA processing | biological_process |
| GO:0008380 | RNA splicing | biological_process |
| GO:0005681 | spliceosomal complex | cellular_component |
| id | description |
|---|---|
| K12849 | PRPF38A; pre-mRNA-splicing factor 38A |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU184126 | lncRNA | upstream | 94798 | 19760152 ~ 19760791 (+) | True | G146350 |
| TU184058 | lncRNA | upstream | 262495 | 19592750 ~ 19593094 (+) | True | G146307 |
| TU184057 | lncRNA | upstream | 269933 | 19585448 ~ 19585656 (+) | True | G146306 |
| TU184055 | lncRNA | upstream | 280015 | 19573323 ~ 19575574 (+) | True | G146304 |
| TU184054 | lncRNA | upstream | 285586 | 19569473 ~ 19570003 (+) | True | G146303 |
| TU184234 | lncRNA | downstream | 148802 | 20007416 ~ 20011135 (+) | True | G146442 |
| TU184248 | lncRNA | downstream | 165559 | 20024173 ~ 20026061 (+) | True | G146450 |
| TU184288 | lncRNA | downstream | 249488 | 20108102 ~ 20109541 (+) | True | G146486 |
| TU184340 | lncRNA | downstream | 323740 | 20182354 ~ 20184643 (+) | False | G146519 |
| TU184369 | lncRNA | downstream | 457393 | 20316007 ~ 20333122 (+) | True | G146544 |
| AMCG00005248 | mRNA | upstream | 10273 | 19837762 ~ 19845316 (+) | True | AMCG00005248 |
| AMCG00005246 | mRNA | upstream | 19103 | 19816840 ~ 19836486 (+) | True | AMCG00005246 |
| AMCG00005236 | mRNA | upstream | 71985 | 19775479 ~ 19783604 (+) | True | AMCG00005236 |
| AMCG00005235 | mRNA | upstream | 83616 | 19762168 ~ 19771973 (+) | True | AMCG00005235 |
| AMCG00005238 | mRNA | upstream | 99799 | 19742353 ~ 19755790 (+) | True | AMCG00005238 |
| AMCG00005247 | mRNA | downstream | 20928 | 19879542 ~ 19884551 (+) | True | AMCG00005247 |
| AMCG00005244 | mRNA | downstream | 76739 | 19935353 ~ 19953666 (+) | True | AMCG00005244 |
| AMCG00005242 | mRNA | downstream | 109065 | 19967679 ~ 19977076 (+) | True | AMCG00005242 |
| AMCG00005254 | mRNA | downstream | 157324 | 20015938 ~ 20019521 (+) | True | AMCG00005254 |
| AMCG00005253 | mRNA | downstream | 188769 | 20047383 ~ 20051117 (+) | True | AMCG00005253 |
| TU184056 | other | upstream | 275782 | 19579573 ~ 19579807 (+) | True | G146305 |
| TU183561 | other | upstream | 2084064 | 17765257 ~ 17771525 (+) | True | G145932 |
| TU183002 | other | upstream | 4470977 | 15384243 ~ 15384612 (+) | False | AMCG00005105 |
| TU182286 | other | upstream | 7074419 | 12780580 ~ 12781170 (+) | True | G144940 |
| TU181952 | other | upstream | 8192221 | 11662681 ~ 11663368 (+) | True | G144677 |
| TU184341 | other | downstream | 323740 | 20182354 ~ 20184643 (+) | True | G146519 |
| TU184347 | other | downstream | 414899 | 20273513 ~ 20279786 (+) | False | AMCG00005272 |
| TU184405 | other | downstream | 663035 | 20521649 ~ 20524819 (+) | True | G146575 |
| TU184436 | other | downstream | 803312 | 20661926 ~ 20670169 (+) | True | G146596 |
| TU184446 | other | downstream | 840872 | 20699486 ~ 20702404 (+) | True | AMCG00005286 |
