RNA id: AMCG00005250


Basic Information

Item Value
RNA id AMCG00005250
length 2915
RNA type mRNA
GC content 0.47
exon number 12
gene id AMCG00005250
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19784874 ~ 19799356 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAAAGCTGTCGGACAGCGAGGAAGCAGCAGCGGATCCTCTGCTCCCGCACGGCGATGTCGGCGTCTGCTGTCTTCATCCTGGACCTCAAAGGGAAGGTGCTGATATGCCGGAATTACATGGGCAACATGGACATGGGTGAGATCGACCACTTCATGCCCATGCTGATGAAGCAGGAAGAGGACGCGGACATGTCTCCACTCCTGAGCCACGGAGCCTCGCACTTCCTGTGGATCAAGCACAGCAATCTGTACCTGGTGGCCATGACCAGGAAGAATGCCAACGCGGCCCTGGTGTTTGCTTTCCTCTACAAGATAGTCGAGGTCTTCAAGGAGTACTTCAAGGAACTGGAGGAGGAGAGCATCCGGGACAACTTCGTCACCGTGTACGAGCTGCTGGACGAGGTCATGGACTTCGGATTCCCGCAAACCACCGACTCCAAGATCCTGCAGGAGTACATCACACAGCAGGGGCACAAGCTGGAGGTGGGCGCCCCGCGGCCCCCAGCAACTGTAACCAACGCCGTGTCCTGGAGGTCGGAGGGGATCAAATACAGGAAGAACGAAGTGTTCATTGACGTCATCGAATCGGTCAATCTGCTGGTGAGTGCCAATGGCAGCGTCCTCCGCAGCGAGATTGTGGGCAGCATCAAGTTGAAGGTGGTCCTCTCCGGGATGCCCGAACTGCGTCTGGGGCTCAACGACAAGGTCCTCTTTGAAATCACAGGCAagGACAAGAGCAAAACTGTGGAGCTGGAGGACGTGAAGTTTCACCAGTGCGTGCGTCTGTCTCGCTTCGAGAACGACCGCACCATCTCCTTCATCCCCCCGGACGGGGAGTGCGAGCTGATGTCGTACCGCCTCAACACCCCGGCCCGCAGCCAGTTCAAGCAGAGATCCACAGCCAACAACGTGGCCATCCTGGTGCCGGTGCCCAGTGACGCAGACTCCCCAAAACTCAAGGCCAGCACCGGCAGCGCCAAGTGGGTCCCAGAGAAGAGCGCGGTCGTCTGGACCATCAAATCCTTCCCCGGCGGGAAGGAATACCTGATGCGCGCGCACTTTGGGCTGCCCAGCGTGGAGAGCGAGCTGCAGGAGGGGAAGCCGCCGATCACCGTGAGCTTCGAGATCCCCTACTTCACCGTGTCCGGCATCCAGGTACGCTACCTGAAGATCATCGAGAAGAGTGGCTACCAAGCCTTGCCCTGGGTCCGGTACATCACCCAGAGTGGAGATTATCAACTACGGACAAACTAGTGGCGGGCTGGAGAGACGAAACTGCACTGGGACACTTTCTGTACTGGGCAGATGAAGAAGATGCCGTTGGGGAATCGAGACTCACCGTTTCCTGCCAGGCAGCTATTCTGTTTCAAAGGGAAGTCCACAGCCGTGGCATCCTGGTAACACTGTGCATTTTTATACAACactgatatgtgtgtgtgtgtatgtaaatacatttcgATTCACACACTTTTTAATTAAGGAAGGAGGGACATAAATTCTGTGATACTTCCCAGCAGTAAAACCTGTCGGACTCTGTTCTCACCAGGAACCAGGCCGAGGATTGTCTGTCCATATTGTTGTTCAATGTCTAGATTGTATGCTgtcctgttttgtgttttgagagagagacatgctttgttattttatagTCCCTTTATAGAAAAGGCAAAGCGAAACGCACTTAACATTTTCAATGTTACACgtcaaacatgaaaacatgaaaaatataaccTTTAATCAACTGCAATAATAACAatctctggataagggcgtctgctaaataaaatctgtgtttttccacagaATAACTCTCACTATGTTATCTGTGTCTGTGGTGACATTATTCTATGCAGAGGCATTGGTTTCAATACCTGGACAGTGTAAACCTGATCAATCATTAACTTAGACTTTGCTCTAGtaattcatttgtttaaaaaaatcgaTTTGATATGTAGCATTTCCATAACAGGGAAGAGATTATTCACAAATgcgagaaaataaataaaaatatctgcGTGTTTTCTTTCTATCCGATCATGGATAAAGCAATGGCACACCTTGATCTCAAATAGTTTGGTCTTGGAGTTCATAAACTGTGCACCTGTGTTTAAAAGATAGATACTGCGAATCTGACTGCAGTTATTTACTCAATGTTTGCAGGAGGTGGCGTTTGGAAGATATTTCTCTCCCAGTGTCTACGGCTGTGCTTTTGctgaattataaaacaaagtgaACAGAACCACACCCAGaacaatatatacttttttagcATTGTGTGAATCTGATGTGCAGTTTACGAGATCTGGGCTTTTTTTAATCAGAACAAATTTGGTTGATATCTGTGAATCCTCAGTCGTTTCTGGGCACTGTTATACACCACCCAGGATTGAGAGACTGTTCAGAAATATTCAGCCCGGGTACAATCTGAGAAAAGCATCACGCTGTCGCTAATTTAATCAGGGTCCTTTTATAATCAATACATCCGGCCAGAAAAGACTCTTCAATTTAAATTCCTCCTATAATGTATTGTGGtattctgatttaatttgtttttctattgttcGTGTAAAGCGTTTGGCCTGCGACAGATTGGCCTTCTATCCCCGTCACCTATTTAAGTTATCTGTACATTATGACACTTTTCCCACAGAGTATACTTATACACCTGGGGATAGAATTGAAAACCTTGCTTGATCAATAGCTGTTTCTTGGTAGGTTATTTATATCATTTCCACTGGAAAGCCCTGGTTAATTTCTAACACTGATTGTATACCTCTGTGTATTTTCTATTGactatgaatgtgtttgtttgctcaGTCACTgtcttatttataaatgtttgctATGGAAACATCGCTAAGGGGGAAATGTTGgctctttttcttgtttaataaaatgctttcaggttgaaa

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K12393 AP1M; AP-1 complex subunit mu

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184135 lncRNA downstream 9883 19771772 ~ 19774991 (-) True G146358
TU184124 lncRNA downstream 27637 19756247 ~ 19757237 (-) True G146348
TU184123 lncRNA downstream 30130 19754196 ~ 19754744 (-) True G146347
TU184074 lncRNA downstream 52757 19704004 ~ 19732117 (-) True G146322
TU184066 lncRNA downstream 173869 19610766 ~ 19611005 (-) True G146315
TU184261 lncRNA upstream 250760 20050116 ~ 20052921 (-) False G146461
TU184262 lncRNA upstream 250760 20050116 ~ 20051755 (-) True G146461
TU184270 lncRNA upstream 263193 20062549 ~ 20063413 (-) True G146469
TU184290 lncRNA upstream 304270 20103626 ~ 20107827 (-) True AMCG00005263
TU184289 lncRNA upstream 308769 20108125 ~ 20109530 (-) True G146487
AMCG00005240 mRNA downstream 23537 19758573 ~ 19761337 (-) False AMCG00005240
AMCG00005241 mRNA downstream 43509 19726944 ~ 19741365 (-) True AMCG00005241
AMCG00005229 mRNA downstream 115822 19664101 ~ 19669052 (-) True AMCG00005229
AMCG00005230 mRNA downstream 157238 19623255 ~ 19627636 (-) True AMCG00005230
AMCG00005228 mRNA downstream 184591 19575236 ~ 19600283 (-) True AMCG00005228
AMCG00005249 mRNA upstream 378 19799734 ~ 19805056 (-) True AMCG00005249
AMCG00005251 mRNA upstream 47435 19846791 ~ 19855209 (-) True AMCG00005251
AMCG00005252 mRNA upstream 58502 19857858 ~ 19878152 (-) True AMCG00005252
AMCG00005243 mRNA upstream 107730 19907086 ~ 19916367 (-) True AMCG00005243
AMCG00005257 mRNA upstream 182178 19981534 ~ 19994664 (-) True AMCG00005257
TU184128 other downstream 23428 19758232 ~ 19761446 (-) True AMCG00005240
TU184064 other downstream 211556 19570059 ~ 19573318 (-) True G146313
TU183873 other downstream 769211 19014547 ~ 19015663 (-) False AMCG00005214
TU182803 other downstream 4817251 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 6448128 13336209 ~ 13336746 (-) True G145046
TU184245 other upstream 221354 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 221354 20020710 ~ 20023507 (-) False AMCG00005256
TU184357 other upstream 475035 20274391 ~ 20279746 (-) True G146532
TU184470 other upstream 809998 20609354 ~ 20610643 (-) True G146618
TU184860 other upstream 1945520 21744876 ~ 21745453 (-) True G146938

Expression Profile