RNA id: AMCG00005251


Basic Information

Item Value
RNA id AMCG00005251
length 3918
RNA type mRNA
GC content 0.57
exon number 19
gene id AMCG00005251
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19846791 ~ 19855209 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGCCACGCCCCCTCGATGCTGCCGCTGCATGTACGTTTCTAACGCGCGAAAATCCTGCGTGGCGGTGGAGTGACTGCAAGGAGGGCAATCTGTTATTAAATGTAGAAAGCCGGTTTAAGTGTGTTTATACGTCTGTGTACTGCTTCTATATTATGTGTTTTTACCGGTTATTTTAACATCTTAAACTATTTATCGATTGTCATTAGACGGGGTGGATTTAACAGTCAGTAGTTGCAGTTTGACAAAGTTGCTAAAACTGCAGATTACAGAAAGGATCATTTTCCAGCAGGTGGAGGTCTGCTGGGTTTTGCATTAAGCTCTTATACTTTAATTGTAGCTGAAGATGAGTCGCTATTTCACCAGGCTGATGAATAAACGAGCCTACATCTGGAGCGGAGAGCCCGTCTACGCTGACCGCAAGCTCCGCTCCTTCCTTTATGAAGGCTTCCTCATGAAGGTCGAGGGCAGCTGTGAAAGCCGTCTGATCAAACCTGGACAGTTTATTCTGGTTGAAAGCGATGATGATGACAATCCCTATGTGGCAAAACTGCTCAAGCTCTACAGCGACGACTCCGGGCGGACGGGCAGCAAGCGGGCGGTGGTGCAGTGGTACATGCGGTTTTGCGAGGTGCACAGAAACAAGAGGAAGCTGCTGGGCAGGGAGCCTCACCCGCAGGAAGTGTTTCTGTTCCAGGTGCCCAGCTGTCAGAACGACATCGACATCGAGACCGTACTCGGATCTGTGCAGCTGCAGTACGTGGAGCCGGACGCTCCCTTCCCCGAGACGCGGGGCCAGGAGAGCACACTCTACGTCAAGATGTCGTGGGACGGGAAGGCCTTCAAGCCGGCCGACCCAAACGTGATCGCACAGGGCGCGGAGCCCTGTCGGCCCGCTGAGCCCGCCGCTGCCCTGGCCACCCCGGACCTGGCGGTAATGAAGCGGGCGGTGTCGGTGAGCACGGGCAAGCGGCGGGCGAGGGAGGCGGAGTCGCACCACTCGGCCTCCAAGTCCGCCCAGTCCAAACGGCTGAGCTCCAGACGGCAGGGCAGCTGCCCGTCCACCCCGGGGGTCCGCAAGAAGCTGCAGCTCAACAGTCCAGGGAAGTCTGCGGGGCCCCTGTTCAACACGGACAACGCGCTGGAGGAGATCCTGCAGGAGGAGGTGCAGTCCCACAAGAGAGAGCTGGCCAACAGGCTGCCCTCCAGCCCCTCGCGCTCCCTCACCCTGGCCGTGCGTCTCTCGCCCATCAAGGTCGCTGCCTACCCCCACCACAGCGTCAGCCTCTCCCCCCTGAAGGTCAGGTTGCCCCCCGCCAGCCCCGGAGAAGACCAGGACTCCGCCAGAGCCTGCCTGCCTCCCCTGGAGGAGGATGTGTTCGAGGTGGCCATTCAGACCAGGTCTTCCAAAACCCCCTGGCAAAAAGATGCCACCCCCAGGAAAAGCACAGCCAGGCCGCAAAGACAGGCGTTCACTCCATCACGCCGGAAGGTCTCCTTGGACGTCGGGGACGGGGCTCTGGGGGTGCTggaggaggaggactcACCAGCCCAGGCTGCAGATATCGCCCAGACTGCGGTGACGCCACGCTCACAGAGGAAGTCGGCCCAGCTGGTGGCCTCGCGCATCAGGAAGCAGTTtgaagaagaagaggaaggggaaggggaaagTGATGGCGACAGCGTGGCTGTGAAGAAAAGCCGACAATCCTCATTGTCCCGCACCCCCAGGTCCACGAGGAAGGCCAGGACTCCCCGGAAGACCCCCAGCAGAAAGGCGACCCCCACTACTCCTCGCACGCCCCGCCAGGCCACTCCCAGCATCCCTAGCAGGTCCCTGCCCGCCAGGAAGCCCGGAAACATTCTGGAGGAGGCGAGAGCGAGgctGCACGTGTCCTCTGTCCCCGAGTCCCTGCCCTGCCGAGAACAGGAGTTCCAGGACATCTACAGCTTTGTGGAGAGCAAGATCATGGACGGCACTGGAGGGTGCATGTACATCTCTGGAGTGCCAGGCACGGGGAAGACCGCCACGGTGCACGAGGTGATGCGCTGTCTGCTGCAGGCGGCCGAACAGGACGACATCCCCGGCTTCAGCTTCATCGAGATCAACGGCATGAAGATGACCGATCCCCATCAGGCCTATGTCCAGATCCTGCAGAAGCTGACGGACCAGAAAGCCACGGCCGATCACGCTGCCACCCTGCTGGAGAAGCGCTTCAGCACCCCTGCGCCCAAGAGAGAGACCACCGTGCTGCTGGTGGACGAGCTGGATCTCCTGTGGACCCGTAAGCAGAACGTGATGTACAACCTGTTCGACTGGCCCACGCGCAGACATGCCAAGCTGGTGGTCCTGGCCATCGCCAACACCATGGACCTGCCCGAGAGGATCATGATCAACCGCGTGGCCAGTAGGCTGGGCCTGACCCGGATGTCCTTCCAGCCCTACACCTTCAAGCAGCTCCAGCAGATCATCACCTCGCGCCTGAACCGGGTCCGGGCCTTCGAGGAGGATGCCCTGCAGCTGGTCTCTCGAAAGGTGGCCGCTCTGTCGGGCGACGCTCGGCGCTGTCTGGACATCTGTCGCCGCGCCACCGAGATCTGCGaggtctcctcctcctccgccgccAACGGCCAACGGTCCGGCTCGGGCCTGGTGGGCATGAGCCACGTCATGGAAGCCCTGGATGAGATGTTCTCCTCGCCCTACGTCACCGCCATACGGTGTGCGTCGCTGCAGGAGCAGTTGTTCCTCAGGGCCGTGATCGCCGAGTTCCGGCGCCTGGGGCTCGAGGAGGCCACCTTCCAACAGGTGTTCCGGCAGCACCAGGCCCTGTGCCGGGTGGAGGGGCTGCAGCCGGTCAGCATGTCCGAGGGTTTGGCCACCTGCCTGCGCCTGGGGGCGTgtcggctgctgctgctggagccgAGCCGCTGTGACCTGCTGCTGCGCGTGCGGCTCAACGTCAGCCAGGACGACGTGCTGTACGCGCTGAAGGAGGAGTAAACCGCAACGACGGACAGACACCAACTGAAGGGAAGGCGGGCCcgtatttttatgtaaaaatggaCATCGCTTGTCACTTTCCACGGAGAGGGGAGTATTGGACATTAAACACACGTATAGCCgttgtttttacacatttattttacatacacatttacagaCCATCTTCTGTGGCGGTAAATTGCGTTTTCGTTGTCAATAGTCTGTGGTGTTTTTCAGAATGagccattgttgaaaatgtaacatgttACAGTTCGCTGCACCAGATTGGCCCGGTTTAAACCCGTAGTTACCTGTTGTAAATAACTACCTCACTGGAAGCACTAATAAACTTGGGAATTTATGACTATCCTTTTAAATATGGGCTTCCCTCCCCGCCATGAGGAAAGACAGAAAATTACTAAATAATGTCTGCGACTCTGCACCCCCAAGTGCTCCTGTCCGCTGGTTCTAATGCAAATCTCATCTCCAGTGCCAAAGACCTACCATTGTAGATAGTGTGTGTTAAATGGCTCCAGATTGCGTTTTGAATCCTGGTTTTTACCTTGTGTTCAGGGTTCGGTTGTCCAGACACCACTGGCTTGTGGACTGAGAGCTGATTAACTAATTAGTACCgttttggttttaaatgctGCTCAGGATTACACTTTTACTATTGGGTTATTGCAACAATTATGTGTAAAAGTgaaacagatttttgttttgcttttaatatttgtattgtccctgaagtgtttttgtttttataataaaatatgtctATTTACATGGCTGTCAGATTGGTGTGTTTTGCAGATAAGATAGGTGTCGGTGCTTTTTCACTGCTATAAGGGTTAATGTTGctattaattgctttaattgcaggggttcccagccctggaggagcccctaccctgctggtttttggtccaaccg

Function

GO:

id name namespace
GO:0001878 response to yeast biological_process
GO:0040014 regulation of multicellular organism growth biological_process
GO:0009790 embryo development biological_process
GO:0005488 binding molecular_function

KEGG:

id description
K02603 ORC1; origin recognition complex subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184135 lncRNA downstream 71800 19771772 ~ 19774991 (-) True G146358
TU184124 lncRNA downstream 89554 19756247 ~ 19757237 (-) True G146348
TU184123 lncRNA downstream 92047 19754196 ~ 19754744 (-) True G146347
TU184074 lncRNA downstream 114674 19704004 ~ 19732117 (-) True G146322
TU184066 lncRNA downstream 235786 19610766 ~ 19611005 (-) True G146315
TU184261 lncRNA upstream 194907 20050116 ~ 20052921 (-) False G146461
TU184262 lncRNA upstream 194907 20050116 ~ 20051755 (-) True G146461
TU184270 lncRNA upstream 207340 20062549 ~ 20063413 (-) True G146469
TU184290 lncRNA upstream 248417 20103626 ~ 20107827 (-) True AMCG00005263
TU184289 lncRNA upstream 252916 20108125 ~ 20109530 (-) True G146487
AMCG00005249 mRNA downstream 41735 19799734 ~ 19805056 (-) True AMCG00005249
AMCG00005250 mRNA downstream 47435 19784874 ~ 19799356 (-) True AMCG00005250
AMCG00005240 mRNA downstream 85454 19758573 ~ 19761337 (-) False AMCG00005240
AMCG00005241 mRNA downstream 105426 19726944 ~ 19741365 (-) True AMCG00005241
AMCG00005229 mRNA downstream 177739 19664101 ~ 19669052 (-) True AMCG00005229
AMCG00005252 mRNA upstream 2649 19857858 ~ 19878152 (-) True AMCG00005252
AMCG00005243 mRNA upstream 51877 19907086 ~ 19916367 (-) True AMCG00005243
AMCG00005257 mRNA upstream 126325 19981534 ~ 19994664 (-) True AMCG00005257
AMCG00005256 mRNA upstream 143958 19999167 ~ 20023496 (-) True AMCG00005256
AMCG00005259 mRNA upstream 168965 20024174 ~ 20026705 (-) True AMCG00005259
TU184128 other downstream 85345 19758232 ~ 19761446 (-) True AMCG00005240
TU184064 other downstream 273473 19570059 ~ 19573318 (-) True G146313
TU183873 other downstream 831128 19014547 ~ 19015663 (-) False AMCG00005214
TU182803 other downstream 4879168 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 6510045 13336209 ~ 13336746 (-) True G145046
TU184245 other upstream 165501 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 165501 20020710 ~ 20023507 (-) False AMCG00005256
TU184357 other upstream 419182 20274391 ~ 20279746 (-) True G146532
TU184470 other upstream 754145 20609354 ~ 20610643 (-) True G146618
TU184860 other upstream 1889667 21744876 ~ 21745453 (-) True G146938

Expression Profile