RNA id: AMCG00005254


Basic Information

Item Value
RNA id AMCG00005254
length 1935
RNA type mRNA
GC content 0.65
exon number 4
gene id AMCG00005254
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20015938 ~ 20019521 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCACGTTTACTAGCCGCGCAGGTGCATTGGTTTGGGGGCAGATCTGGGAGTTTCGCCCCCTTGAGCAGGGTGGTCTCCGGCTCTGTGGGGTCCAGCCGGCGGACTTACGGCAGCAGAGATGGGCCGGGGTCCGATTACCTGCACAGGAGCGTCGTTCCCACAATGCACTACCAGAAGAGTTTGCCCAGCAACACTGAGCAGCTGGCCCACAGCTTCCAGAGCGGGGCAGGGAAGGAGCTGCATGAGGAGCTGGTGGCCAAGGACAAGAAGAACAAGCACACCAGCTACATCTCTGCGCCTTGGTTTGACATGTACCTGTCAGCGCGGGAGCCCGTTGTGCTGAACTTCAACCCCTTCATGTCCTTCAACCCCGACCCAAAGCCGGAGTACAACGACCAGCTGCTGAGGGCCACCAACATGACAGCGTCGGCTGTGCGCTTCATGAAGACGCTGCGCGCCGGAGTCCTGGAGCCCGAGGTGTTCCACCTGAACCCGGCCAAGAGCGACACGAACGGCTTCAAGAGGCTCATCCGCTGGGTGCCGCCCTCGCTCTCCTGGTACGGCGCCTACATGGTGAACGCCTACCCCCTGGACATGTCCCAGTACTTCCGCCTGTTTAACTCCACCCGCATCCCCAGGCCGGGCCGGGACGAGCTGTTCACCGACAGCCGGGGCAGACACCTGCTGGTCATGCGCAAGGGGCACATGTACGTGTTTGACGTCCTGGACCACGACGGGAACCCAGTGCAGCCCGCGGACATCCACGCCCACCTCAAGTTCATCCTGTCGGACGCGACCCCGCCGCCTGCACTACCCCTGGGCTTCCTGAGCAGCGAGAACCGGGACGTGTGGGCCGGGCTGCGGCAGAAGCTGCTGGAGGCGGGCAACGAGGCAGCGCTGGCGCAGGTGGACAGCGCCCTGTTCTGCCTGTGCCTGGATGACGAGCCCATGAGGGACCACATCCACACGTCCCACAACATGCTGCACGGTGATGGCAGCAACCGCTGGTTCGACAAGTCCTTTAGCATCATCATGGCTGCGGACGGGGAGGCGGCCATCAACTTCGAGCACTCGTGGGGCGACGGGGTGGCCGTGCTGCGCTTCCAGAATGAGGTCTTCAAGGATTCCACGGAGCGGCCCCTCGTCGGCCCCCAGTCCATCCCCGCGGCCACAGCCGACTCGTCCGCCGCAGTCCACCGGCTGGAGTTCAAGCTGGACGGCGCGCTGCGGGACGGCATCGCCAAGGCCAAGGACAACTTCCGGGCGGCCACCTCCAAGCTCTCCATCGACGCCATGGAGTTCAAGAGCGGGGGCAAGGAGGCGCTGAAGAGGAAGAAGCTGAGTCCCGACGCCGTGTCCCAGCTGGCCTTCCAGATGGGCTTCCTCCGGCAGTACGGGCAGACTGTGGCCACCTACGAGTCCTGCAGCACCGCCGCTTTCCGGCATGGCCGCACCGAGACCATCCGCCCGGCCACCGTGCACACGCAGCGCTGCGCCAACGCCTTCGTCCGCCAGCCGGGCAAGCACAACCTGGACGAGCTGCGCGGCATGCTGCAGGACTGCTCCAAGTACCACGGGCAGCTCACCAGGGAGGCCGCCATGGGCCAAGGGTTTGACCGGCACTTGTTTGCCATGCGGTACCTCGCCAATTCCAAAGGCCAGGCCCTGCCCAGTCTCTATCAGGACCCGGCCTACGCAGCCATCAACCACAACATCCTGTCCACCAGCACCCTGACCAGCCCGGCGGTCAGCCTGGGGGGGTTTGCCCCGGTGGTCCCCGACGGGTTCGGCGTGGGCTACGGTGTCCATGATGACTGGATCGGCTGCAACGTCTCCAGCTACCCCTCCCGCAACGTGCACGAGTTCCTGCAGTGCGTTCACAAGTCTCTGGAGGACATCTTCGGCGTCCTGGAGGGGAAGCCCATCAGCTAg

Function

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0006810 transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0004095 carnitine O-palmitoyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184234 lncRNA upstream 4803 20007416 ~ 20011135 (+) True G146442
TU184126 lncRNA upstream 255147 19760152 ~ 19760791 (+) True G146350
TU184058 lncRNA upstream 422844 19592750 ~ 19593094 (+) True G146307
TU184057 lncRNA upstream 430282 19585448 ~ 19585656 (+) True G146306
TU184055 lncRNA upstream 440364 19573323 ~ 19575574 (+) True G146304
TU184248 lncRNA downstream 4652 20024173 ~ 20026061 (+) True G146450
TU184288 lncRNA downstream 88581 20108102 ~ 20109541 (+) True G146486
TU184340 lncRNA downstream 162833 20182354 ~ 20184643 (+) False G146519
TU184369 lncRNA downstream 296486 20316007 ~ 20333122 (+) True G146544
TU184422 lncRNA downstream 622747 20642268 ~ 20655773 (+) True G146590
AMCG00005242 mRNA upstream 38862 19967679 ~ 19977076 (+) True AMCG00005242
AMCG00005244 mRNA upstream 62272 19935353 ~ 19953666 (+) True AMCG00005244
AMCG00005247 mRNA upstream 131387 19879542 ~ 19884551 (+) True AMCG00005247
AMCG00005245 mRNA upstream 157324 19855589 ~ 19858614 (+) True AMCG00005245
AMCG00005248 mRNA upstream 170622 19837762 ~ 19845316 (+) True AMCG00005248
AMCG00005253 mRNA downstream 27862 20047383 ~ 20051117 (+) True AMCG00005253
AMCG00005255 mRNA downstream 32428 20051949 ~ 20063397 (+) True AMCG00005255
AMCG00005262 mRNA downstream 109708 20129229 ~ 20139948 (+) True AMCG00005262
AMCG00005261 mRNA downstream 121701 20141222 ~ 20148284 (+) True AMCG00005261
AMCG00005260 mRNA downstream 153212 20172733 ~ 20175331 (+) True AMCG00005260
TU184056 other upstream 436131 19579573 ~ 19579807 (+) True G146305
TU183561 other upstream 2244413 17765257 ~ 17771525 (+) True G145932
TU183002 other upstream 4631326 15384243 ~ 15384612 (+) False AMCG00005105
TU182286 other upstream 7234768 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 8352570 11662681 ~ 11663368 (+) True G144677
TU184341 other downstream 162833 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 253992 20273513 ~ 20279786 (+) False AMCG00005272
TU184405 other downstream 502128 20521649 ~ 20524819 (+) True G146575
TU184436 other downstream 642405 20661926 ~ 20670169 (+) True G146596
TU184446 other downstream 679965 20699486 ~ 20702404 (+) True AMCG00005286

Expression Profile