RNA id: AMCG00005255


Basic Information

Item Value
RNA id AMCG00005255
length 2589
RNA type mRNA
GC content 0.58
exon number 12
gene id AMCG00005255
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20051949 ~ 20063397 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGCAGCACAACGtctctttaaataatacaaatcacgATCTAATCTAACCTGCTATGTGTCTAATGTCTTACGTGGTGAAGTGCGCCCCAGTGCAGCCGTGCATTGGTGCACTTTATACACGAGCCCTGCCGTCCTGGTGCAAAGTGCGGCTTGTCCCGTATATAGGAGGCAGTGGAGATCATTAACtgctctgcgcagatctgctcTTGAAGCTGAAGGCAGCGGTAGGCGCTCTTTGAAGCCACTCTTCTCCGTGTCCAGCACCGCGCATCCGAGCCGGCCGGCCCAGACCACCATGGAGATCCTCCGCACTCCGCTGCTGGCTTCTGCCGCCATCCGCAGCGCCTCCACCGGCACGCTGGAGGTGAAGGAGCCGCTGAACTTCTGGGGCGGAGGCCGGGTGAAGCCGTCCAGCAAGGACGCCAAGCCCAGCGAGGCGGTGTGCGAGCCGGCCACAGGACGGGTGCTGTGTCACATGGTACCCTGCGGGGCCCAGGAGGTGGACCAGGCCATCCAGAGCGCCCAGTCGGCCTTCCTCAAGTGGAGCAAGCTGTCCGGCATGGAGAGGGCGCGCATCATGCTGGAGGCGGCCCGCATCATCCGGGAGCAGAGAGAAGACATCGCCAAGGTGGAGGTCATCAACAACGGCAAGTCCATCAGCGAGGCACTCGTGGACATCGACATCGCCTGGCAGAGCATCGAGTACTACGCGGGCATCGCCGGCACGCTGGCAGGCCAGCACGTCCAGCTGCCAGGGGGCACGTTCGCGTACACTCGCCGGGAGCCcctgggggtgtgtgtgggcATCGGCGCCTGGAACTACCCCTTCCAGATCGCTGCCTGGAAGTCGGCCCCCGCTCTGGCCTGCGGGAATGCCATGGTGTTCAAGCCGTCTCCCATGACCCCGGTCACCGCTGTGATGCTGGCGGAGATCTACGCACAGGCGGGCGTCCCTGAGGGGCTTTTCAACGTGGTGCAGGGCGGCGCCGAGACGGGCAGCCTTCTGTGCCAGCACCCGGGCGTGGCCAAGGTGTCTTTCACGGGCAGCGTCCCCACCGGAAAGAAGATCATGGAGATGTCATCGAAGGGCGTGAAGCCGGTGACCCTGGAGCTTGGGGGGAAATCCCCCCTGATCATCTTCAGCGACTGTGAGCTGGACAACGCTGTGAAGGGCGCCCTCAATGCCAACTACCTGTCCCAGGGCGAGGTCTGCTGCAACGGGACGCGCGTGTTTGTGCAGAGGGACATCCTGCCCGCCTTCCTGGAGCAGGTGGTGAAGCGGACCAAGGCCATCAAGGTGGGGGACCCCCTGCTGGACGACACCAGGATGGGGGCCTTGATCAGCCGGCCGCACCTGGACCGCGTGCTGGGCTTCGTCACCCAGGCCAAGAAGGAGGGGGCCAGGGTCCTGTGTGGAGGGGAGCCGTTTATCCCCAGTGACCCCAAACTGAAGGGAGGGTACTTCATGTCCCCCTGTGTGCTGGaCAACTGCAGCGACACCATGACCTGCGTGAAGGAGGAGATCTTCGGCCCGGTGATGTCCGTGCTGCCCTTCGACACCGAGGAGGAGGTCCTGCAGAGAGCGAACAACACCACCTTCGGCCTGGCCTCGGGCGTCTTCACCAGGGACATTTCACGTGCACATCGTGTGGCTGCGAACCTGCAGGCAGGGACCTGCTTCATCAACAACTACAACATCAGCCCCGTGGAGCTGCCGTTCGGAGGGTACAAGATGTCAGgcttcGGCCGGGAGAACGGCACGGTGACCATCGAGTATTACTCCCAGCTGAAGACCGTCATCGTGGAGATGGGCGACGTGGACTGCCAGTTCTAGGCGTTTCTCCGTGCTTCCCTCAGAAGGCTGCTGAGGAGAAATACACTACTTAATTGTACGCATATTCCTACACGCAATCGGACCGTAACTAGTTTTTATTGGGTCCAGAAGTGGCTAAGATAGTGGGTTTCACACCCAGTGCTTCAATTCCTGCTTTTCTATAGAATCCTGTAGCCCTGGCTGTGCTTGGTCACGGGTGTATGGGCCCTGGCTGTGATTGGTCACGGGTGTATGGGCCCTGGCTGTGATTGGTCACGGGTGTATGGGCCCTGGCCCTGATTGGTCACCACATTCTAAATTCTGGACCAGAAAATGCAATACAGATCAAAGCAACCAGTGATTTTTAAGCATTTCAGGAACTAAGTGAATTGGGCTGTTTcggtctctctttctctgagtAGAAATAGCCCAAGACTCATCCATCTCTACCTTTCAGCGATTTTGATTCAGTATTCAGGAGTATAAATGATCCCTTctttccctgcctctctctcacactctctctctctctttgaatcAAACTCTTCCTTCATGGTTGAGAATCCAAACTGTGAATCACACCTCCTGCGCTTTCTGGTCCTCGGAGATTTAATTTGCCCTACCGGCTCTGTCCCGCCTCGCCACCCCCCTCGGGACTCTCTATACTCCCAAGAGCCTCGTTTTGAATTACAAGTTGATTTGTTtaacacagtttattttgttttgtatcaagCACTGCTTTACCTGAATAAATATCACAGTTACTAACGGACAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004029 aldehyde dehydrogenase (NAD+) activity molecular_function

KEGG:

id description
K00149 ALDH9A1; aldehyde dehydrogenase family 9 member A1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184248 lncRNA upstream 25888 20024173 ~ 20026061 (+) True G146450
TU184234 lncRNA upstream 40814 20007416 ~ 20011135 (+) True G146442
TU184126 lncRNA upstream 291158 19760152 ~ 19760791 (+) True G146350
TU184058 lncRNA upstream 458855 19592750 ~ 19593094 (+) True G146307
TU184057 lncRNA upstream 466293 19585448 ~ 19585656 (+) True G146306
TU184288 lncRNA downstream 44705 20108102 ~ 20109541 (+) True G146486
TU184340 lncRNA downstream 118957 20182354 ~ 20184643 (+) False G146519
TU184369 lncRNA downstream 252610 20316007 ~ 20333122 (+) True G146544
TU184422 lncRNA downstream 578871 20642268 ~ 20655773 (+) True G146590
TU184426 lncRNA downstream 579375 20642772 ~ 20661600 (+) True G146591
AMCG00005253 mRNA upstream 832 20047383 ~ 20051117 (+) True AMCG00005253
AMCG00005254 mRNA upstream 32428 20015938 ~ 20019521 (+) True AMCG00005254
AMCG00005242 mRNA upstream 74873 19967679 ~ 19977076 (+) True AMCG00005242
AMCG00005244 mRNA upstream 98283 19935353 ~ 19953666 (+) True AMCG00005244
AMCG00005247 mRNA upstream 167398 19879542 ~ 19884551 (+) True AMCG00005247
AMCG00005262 mRNA downstream 65832 20129229 ~ 20139948 (+) True AMCG00005262
AMCG00005261 mRNA downstream 77825 20141222 ~ 20148284 (+) True AMCG00005261
AMCG00005260 mRNA downstream 109336 20172733 ~ 20175331 (+) True AMCG00005260
AMCG00005273 mRNA downstream 145394 20208791 ~ 20209457 (+) True AMCG00005273
AMCG00005272 mRNA downstream 189612 20253009 ~ 20279577 (+) True AMCG00005272
TU184056 other upstream 472142 19579573 ~ 19579807 (+) True G146305
TU183561 other upstream 2280424 17765257 ~ 17771525 (+) True G145932
TU183002 other upstream 4667337 15384243 ~ 15384612 (+) False AMCG00005105
TU182286 other upstream 7270779 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 8388581 11662681 ~ 11663368 (+) True G144677
TU184341 other downstream 118957 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 210116 20273513 ~ 20279786 (+) False AMCG00005272
TU184405 other downstream 458252 20521649 ~ 20524819 (+) True G146575
TU184436 other downstream 598529 20661926 ~ 20670169 (+) True G146596
TU184446 other downstream 636089 20699486 ~ 20702404 (+) True AMCG00005286

Expression Profile