RNA id: TU184290


Basic Information

Item Value
RNA id TU184290
length 1333
lncRNA type sense_over
GC content 0.49
exon number 4
gene id AMCG00005263
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20103626 ~ 20107827 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagaggagtcTGTGCTTCTGGAGGTCCCCTTCTGGTGGAAAGTCCCAGAAGTGATGATGCTTCCCAGAAGGTGGGGCTTAGAACATGATATTTCACACTTGCTGTTCATTTGAACTTCGAGACTTACAGAAGCAGCAGCTAATCCATTTAGATCACTGAACTGTGAAGATGGCCATTCCAATACTGGATTTTGACCCAAGTTCCCCAAATGGAGATTGCATGGGGGCGAACTCAAACGGCACACGGGGGTCCGCTCTGCGCTGGCTGTGGACTGTCCCACTTGACTACATCCGGGGGCTGCGGTCCAAAGTGCGAGGCATCGCGGGGAGAGTGGCACGTGCCTTCCGGAGAGCCTCATCTGAGCTTCCTTGGTCAGTGGAGGAGACAGCGCCCCACACTGTTGGACCCTACGTGGTTGTCTACGGCTAAGAAGTCGTCATCCTACTGGACCACTACAGCTGCTGGGTTTACAACTGGACTCTTTTACTGCAGAGATGCGACTTTACTTGAATAGACAACAAAATAGCAGGTTCAGGATGAGATGACACCACTAAGCCCAATTTGAATGAGCAAAACAGACACCACCATCTCCCAGCCTCGATCACCTTGCCTTCAGTTTACACTCCTGCCCTCCACCGGGTGAAGATAAGGACCTGACACGGACCAGCATTAGTCAAGGACAAGTGAAATGGAAAACGAGTTGCACTTGTGAAGCTGCTCTGACTAATACTTGAACTGCAAGACCACTGGAAGATGGCGGCCAACACTATGCCCCCCAGTTTCTCTGTCTTAATGGGACCTGACGGGAATGAGCATTAATTTCCCAGCCTTCCTGTCCTCATGCGCCAAAGTgccacaaactgacacacacatctGGCCATCTGGCAGTTATGGCAAATCCCAGAAGGGCTGACAAATGTCTGTCAATTCCCATGTGGCCGGTCACCCTGTGTGGACAACTAGACCACACATCGCCAACACCCCCCCGTGACAGCACTTTATTGCgacccagacttcaccagccGTTGTCTCCCTGGGTGTAAGTCCAGGGCCgttttggtcccagtccgcccctgcacacacacaaacatggtGCTATAAAGTGCTGTTTTTTCTCAACAAGTCACTGCCCAGTATCCACAGATCGCCtttgcaccaaaacagccctAAGTTGTAGCACAGGGGACTCACAACACTGCAGATGGTTCTGGAGCAACAACACAAGAACCCGTACAgtatttacttaaaaacaaaactctatTTTAAACggatgtatatatgtatatatatttatatatgaaatgtttgtaatatatatatttttctaattgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184270 lncRNA downstream 40213 20062549 ~ 20063413 (-) True G146469
TU184261 lncRNA downstream 50705 20050116 ~ 20052921 (-) False G146461
TU184262 lncRNA downstream 51871 20050116 ~ 20051755 (-) True G146461
TU184135 lncRNA downstream 328635 19771772 ~ 19774991 (-) True G146358
TU184124 lncRNA downstream 346389 19756247 ~ 19757237 (-) True G146348
TU184289 lncRNA upstream 298 20108125 ~ 20109530 (-) True G146487
TU184317 lncRNA upstream 38258 20146085 ~ 20147354 (-) True G146503
TU184375 lncRNA upstream 208233 20316060 ~ 20321620 (-) True AMCG00005270
TU184402 lncRNA upstream 384344 20492171 ~ 20494411 (-) False AMCG00005276
TU184406 lncRNA upstream 413822 20521649 ~ 20523818 (-) True G146576
AMCG00005258 mRNA downstream 60283 20030569 ~ 20043343 (-) True AMCG00005258
AMCG00005259 mRNA downstream 76921 20024174 ~ 20026705 (-) True AMCG00005259
AMCG00005256 mRNA downstream 80130 19999167 ~ 20023496 (-) True AMCG00005256
AMCG00005257 mRNA downstream 108962 19981534 ~ 19994664 (-) True AMCG00005257
AMCG00005243 mRNA downstream 187259 19907086 ~ 19916367 (-) True AMCG00005243
AMCG00005268 mRNA upstream 12953 20120780 ~ 20126843 (-) True AMCG00005268
AMCG00005264 mRNA upstream 19332 20127159 ~ 20131739 (-) True AMCG00005264
AMCG00005269 mRNA upstream 39585 20147412 ~ 20159101 (-) True AMCG00005269
AMCG00005267 mRNA upstream 55524 20163351 ~ 20174057 (-) True AMCG00005267
AMCG00005265 mRNA upstream 67670 20175497 ~ 20180979 (-) True AMCG00005265
TU184245 other downstream 80119 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 80119 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 342180 19758232 ~ 19761446 (-) True AMCG00005240
TU184064 other downstream 530308 19570059 ~ 19573318 (-) True G146313
TU183873 other downstream 1087963 19014547 ~ 19015663 (-) False AMCG00005214
TU184357 other upstream 166564 20274391 ~ 20279746 (-) True G146532
TU184470 other upstream 501527 20609354 ~ 20610643 (-) True G146618
TU184860 other upstream 1637049 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 1863208 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 1922998 22030825 ~ 22035272 (-) False AMCG00005362

Expression Profile