RNA id: AMCG00005264


Basic Information

Item Value
RNA id AMCG00005264
length 2326
RNA type mRNA
GC content 0.47
exon number 5
gene id AMCG00005264
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20127159 ~ 20131739 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCACGCTCggctgtaaataaaatgctaGTAAGGTGTCTGCGTGCTTTCTTGTCTGCTCTGCATCTAATTTCACTGCTCAGCTAATTTCTCCCAGGTTCAATGTCCCATAGGTCAACGTCCAGTCTCATGGCCGGCGGTAGTTTGCTTTTGAGTTTGAACTTTGCATTGCAAGATCGCTTCTATAGAGACTATATTTAATGCATATAGTctttatgctttttaaatgtcaagatCAGTTTCCCTAAGGTGTAATATAATCCCTAAGCGCACGGTTCACGTTGTGCATGGCCTGGGCTGAGCTCCAGCTATGCACCGACTCCCTGCACGGGTTGTGTGCATTGTGTACAGCTGACACAATGACCAGTATTGTGCAAAGCAGTTTCACCAACCTAAAGGATACACAAAGCATCCCCCCACCTGTTGGCCGTTTCTTTGTGGACTGATACTGAGCCTGATGGTGATTCACACTAAATCCAATGAGCCTTTTGTTTCCTTGTGGTAACCATGCTTTTTCCTAATTAAATGCCACACCCTGAGGTAAGGCAGTATGTTTGTCAGGACAGTGTGGATAGGATCCTATACGAGCAGCCTACTTATTCCCCTCATTATAAAACCATCCCTTCTGTTCCCTCCAGACAGGCTGAAGTGAAGATGTCTGCCGGTAAAGCTCGCATCGGGAAGCCCGCCCCGGACTTCAAGGCCATGGCGGTGATGCCTGATGGCCAGTTCAAGGAGGTCAAGCTCTCCGACTACAGAGgGAAGTACGTGGTGTTTTTCTTCTACCCCCTGGACTTCACCTTCGTCTGTCCCACGGAGATCATTGCCTTCAGCGACGGTGCGGAGGAGTTCAAGAAGATCAACTGCGAGGTGATCGGTGCCTCTGTGGACTCCCACTTCTGTCACCTGGCCTGGATCAACACACCCCGGAAGCAGGGAGGTCTGGGTCACATGAAGATCCCCCTGGTGTCTGACACGCTGCGCTCAATCTCCACGGACTATGGCGTGCTGAAGGAGGACGAGGGCATCGCCTTCAGAGGTCTGTTCATCATTGATGACAAGGGCATCCTGCGCCAGATCACCATCAACGACCTGCCCGTGGGGCGCTCTGTGGATGAGACGCTGCGTCTGGTGCAGGCCTTTCAGTTCACCGACAAGCACGGAGAAGTGTGCCCCGCCGGCTGGAAGCCCGGAAGTGACACCATCAAGCCCGACATCCAGAAGAGCAAAGACTTCTTCGCCAAGCAGAAGTAAACGGACCCTTCTGTGCACCGTGCTCTAGGCCTCTTGAGACCGCGGACCTGTGGGGGAACAACCTAGTGTAGGGGCGGGGGATGTAATTAAGTCATAGTGACcttgttctgtattttgttactgttattaaaataatataaagcgTAGAGACCAAAGTGTGACTGGGGGGGAAACCTGGTCACCATTACAGCACTTGGAACTCGGAAGTGATCACTGTTTGCCTTAGAGATGTTTGTTAATGCCTTTTATGGGGGTCTTTCTGTGAACCTGTCATTTAACTGTCAAGAACTGATTTTCCAGTACgttctgcaggtttttgtgACTTAACACCTAGTGTTGCTAGTACTGTGGCTCCAAGTTTTGTGGAGATGGTTGGGTGGGACGTGCCCAgctgtattcattttgtatattaaaGTGGTCCGTCATCCAGAAACTAGGACCACAAGGTAACTAGCACCATCTGATATTGCACTATGACAAACTATTTTTGTGTGATCTTTGACTGAGGATAATAAAAGTAGGTGGTGAGAAAATGGTTTTGTATTGTATGAATTCCCTTTGTATCCCCCTGTCTTGTGTATGGCTTGCTGTTAAGTTTCTATTCCCATAAGTACAGAACCCATTTGTAAAGGTCTGAAGTGGGTAATGATGCACTGAACACTAATTCTGCTTTCCAGTGGTTTGCTTGTCCTGTTCATATGCTTTTTCATATTGAGCAAATAGTACACCATTTACACAACCTAAATATCATTAAACTGCTCTAGTGCCATCTGGGTCTTTTGGTGACCAAGTCTTGCATTAGGACTATTAATAAACTTATTTAATACGAGTGTGTCAAAAGTCACTAGAAACTGCatgatttttacttttacctTCTGTCCTTAAACCTCATCCTTAATTGttccattctttaaaatatgaagttaCATTTGAACTTAGTCCGATACTGTGGACTTCCACAGGCCTGTATTGTCCGCGCTAATGAATATTGAGTGCAAAGTGGTCCATTTATTCTGTACTTCCAGTCCAGCTCTAGAGTGCGTCTTTCCCTACACGCACACACGCCCGTTTTTC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016209 antioxidant activity molecular_function
GO:0051920 peroxiredoxin activity molecular_function

KEGG:

id description
K03386 PRDX2_4, ahpC; peroxiredoxin 2/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184289 lncRNA downstream 17629 20108125 ~ 20109530 (-) True G146487
TU184290 lncRNA downstream 19332 20103626 ~ 20107827 (-) True AMCG00005263
TU184270 lncRNA downstream 63746 20062549 ~ 20063413 (-) True G146469
TU184261 lncRNA downstream 74238 20050116 ~ 20052921 (-) False G146461
TU184317 lncRNA upstream 14346 20146085 ~ 20147354 (-) True G146503
TU184375 lncRNA upstream 184321 20316060 ~ 20321620 (-) True AMCG00005270
TU184402 lncRNA upstream 360432 20492171 ~ 20494411 (-) False AMCG00005276
TU184406 lncRNA upstream 389910 20521649 ~ 20523818 (-) True G146576
TU184408 lncRNA upstream 402629 20534368 ~ 20535200 (-) True G146578
AMCG00005268 mRNA downstream 316 20120780 ~ 20126843 (-) True AMCG00005268
AMCG00005263 mRNA downstream 19436 20103626 ~ 20107723 (-) False AMCG00005263
AMCG00005258 mRNA downstream 83816 20030569 ~ 20043343 (-) True AMCG00005258
AMCG00005259 mRNA downstream 100454 20024174 ~ 20026705 (-) True AMCG00005259
AMCG00005256 mRNA downstream 103663 19999167 ~ 20023496 (-) True AMCG00005256
AMCG00005269 mRNA upstream 15673 20147412 ~ 20159101 (-) True AMCG00005269
AMCG00005267 mRNA upstream 31612 20163351 ~ 20174057 (-) True AMCG00005267
AMCG00005265 mRNA upstream 43758 20175497 ~ 20180979 (-) True AMCG00005265
AMCG00005266 mRNA upstream 50641 20182380 ~ 20186437 (-) True AMCG00005266
AMCG00005270 mRNA upstream 188852 20320591 ~ 20339165 (-) False AMCG00005270
TU184245 other downstream 103652 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 103652 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 365713 19758232 ~ 19761446 (-) True AMCG00005240
TU184064 other downstream 553841 19570059 ~ 19573318 (-) True G146313
TU183873 other downstream 1111496 19014547 ~ 19015663 (-) False AMCG00005214
TU184357 other upstream 142652 20274391 ~ 20279746 (-) True G146532
TU184470 other upstream 477615 20609354 ~ 20610643 (-) True G146618
TU184860 other upstream 1613137 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 1839296 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 1899086 22030825 ~ 22035272 (-) False AMCG00005362

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_01302094_01304391.mRNA True 1818 mRNA 0.37 5 CI01000004 1301149 ~ 1304664 (+)