RNA id: AMCG00005266


Basic Information

Item Value
RNA id AMCG00005266
length 1750
RNA type mRNA
GC content 0.52
exon number 6
gene id AMCG00005266
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20182380 ~ 20186437 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGCAACAGGCCTGGACAGCTGGGTTGCCAAACCTCCCAGAATGCCGTTTCCCTGCTGTTAAACAAACCGCTTGACTTATGACCTGGACTGAAGCAAGTGTTGTGCAAAACCGCTGTATAAAGAGCAGCGAAGGGGACTCGACTCCAGCTCAGATACTCAACACCATCACGAGAGACACGGAGCAAACAGggaCTGTGGTAAGATGAAGCTGTATCTGGCTGCCGTGGCGGTTCTGGTCCTGGTGTCCACTGCTCTCTGCCATGAGGACGACAAGTGCCTGGGCGGAGGAAAGCACAAGGCAGTCGCCAGCCGAGAGGAGGGCATGACAGAGTGCTCAATCTATTCCAACTTCGGCCGGCCCGGGCCATTCGGTCACGGTTACCACTTCTCCTCCCTCGCAGCCTCCTGTTGCACCAGCACCTTCACCAAACAGCTCATCTCCCCGGTGAAGGAGGTGGACGGCACCTACTGGAACCGCTGCCAGCAGCCGAGCGAGCGGTGCGAGGCGTTCATGAAGAGGATCGAGTGTTTCTACCAGTGCTCCCCCCACGCCGCCCACTGGATGAACCCCGAATACAACGCAAGCATAGTGAACGTGCCCCTGTGCGCCAGCTTCTGCGATGACTGGTTTGACGCCTGCAAGGACGACCTGACGTGTGCTGGGAACTGGCTCACCGACTACAAATGGGACGCTGATGGCAACCACTGCCAAAGAGACTGTGTGCCCTACAGCCAAATGTACACCAACGGAACGGACCTCTGCACGAACATGTGGGGCGGGTCCTTCAACGTGAGCGAGTCCAACTGCCGCTGCCTGCGGCTGGACGGGctggacgggcaggacgagctGGTGCTGAACTACATTCTGCACCCgggctccagctccagctccagcagctccagcagcagctccgCCGACAGCCAGGAGAAGTCGTGCCAGCGCGCCCTGCGCAGACTGGAGAGGCAGAAGGCTAAGGCAGAGgtggaggcggaggaggagggtCCGGAGTGAGTGCTGGGTCATAGATAGATATTTGAGCCATACATTGGggcagggattcccaaaccgatcctggaggagcccctgtcctgctggtttttgttccaactgagctcataattacataattgagttttattttgcatttttagttcaattaaggattcaattacgCAATTAAGAGCTcatctggaacaaaaaccagcaggctAGTCTCGACCTTTAGATTAGTCCTAATTTGACAGTTAGTCTAATGCAAGTAATTCAGTTGCATGAATTAAGACTGACTAGACTGAGAATTGAAGTCTCTCTTCCCATTGAAACTGCTGCCTGGGACAGACAAGCCTCCCACTGGCTCATACTCCCAAAGtactatatatattgttctgcattatatttcaacaACTATCATAGATCTTCAGTTACTCTAGACTGGGATTGTCGCTGTTTTGGagaacctttctttttttccccccaagtgTCTTACAATTCACACAATGCGTGATTGACcaagtaagaccagtctaaggatgCCTGTTTAATTTCGCTGCATTTCATTGTTATTTCCAAGGTCAGTGGTTCTGAAGATGGAATAAGATCTCATGTCTGTGCTGTAGGGGCCGGACTGACTCCTCTCTGGGGGCCCGACCGCATCAAGACGTTTCTTACAAAGTGTCTTTACCAGACTCACCTTACAAACATCCAGAAATGcaccttttttccttcttcttggcaattaaaacaaagt

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184317 lncRNA downstream 35026 20146085 ~ 20147354 (-) True G146503
TU184289 lncRNA downstream 72850 20108125 ~ 20109530 (-) True G146487
TU184290 lncRNA downstream 74553 20103626 ~ 20107827 (-) True AMCG00005263
TU184270 lncRNA downstream 118967 20062549 ~ 20063413 (-) True G146469
TU184262 lncRNA downstream 130625 20050116 ~ 20051755 (-) True G146461
TU184375 lncRNA upstream 129623 20316060 ~ 20321620 (-) True AMCG00005270
TU184402 lncRNA upstream 305734 20492171 ~ 20494411 (-) False AMCG00005276
TU184406 lncRNA upstream 335212 20521649 ~ 20523818 (-) True G146576
TU184408 lncRNA upstream 347931 20534368 ~ 20535200 (-) True G146578
TU184451 lncRNA upstream 412802 20599239 ~ 20599503 (-) True G146607
AMCG00005265 mRNA downstream 1401 20175497 ~ 20180979 (-) True AMCG00005265
AMCG00005267 mRNA downstream 8323 20163351 ~ 20174057 (-) True AMCG00005267
AMCG00005269 mRNA downstream 23279 20147412 ~ 20159101 (-) True AMCG00005269
AMCG00005264 mRNA downstream 50641 20127159 ~ 20131739 (-) True AMCG00005264
AMCG00005268 mRNA downstream 55537 20120780 ~ 20126843 (-) True AMCG00005268
AMCG00005270 mRNA upstream 134154 20320591 ~ 20339165 (-) False AMCG00005270
AMCG00005271 mRNA upstream 184231 20370668 ~ 20391561 (-) True AMCG00005271
AMCG00005276 mRNA upstream 304614 20491051 ~ 20502206 (-) True AMCG00005276
AMCG00005277 mRNA upstream 337609 20524046 ~ 20525301 (-) True AMCG00005277
AMCG00005275 mRNA upstream 355665 20542102 ~ 20547367 (-) True AMCG00005275
TU184245 other downstream 158873 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 158873 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 420934 19758232 ~ 19761446 (-) True AMCG00005240
TU184064 other downstream 609062 19570059 ~ 19573318 (-) True G146313
TU183873 other downstream 1166717 19014547 ~ 19015663 (-) False AMCG00005214
TU184357 other upstream 87954 20274391 ~ 20279746 (-) True G146532
TU184470 other upstream 422917 20609354 ~ 20610643 (-) True G146618
TU184860 other upstream 1558439 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 1784598 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 1844388 22030825 ~ 22035272 (-) False AMCG00005362

Expression Profile