RNA id: AMCG00005267


Basic Information

Item Value
RNA id AMCG00005267
length 4190
RNA type mRNA
GC content 0.56
exon number 11
gene id AMCG00005267
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20163351 ~ 20174057 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAACGACGGAAGGCACTGCTAGCAAAGGCACCACTCAGATGGAGACAGCACATCGGGTGTGTATGCAAAGCAACACAATTAAACCACAAAGGCAAATACAGCAGCAAGTACATTTGTTCTGGCTTGGGTTTGTGTATCATGCCGGACCTGACGCAGCCAAACACAGAAGGAATATATTCACACAACAGTCACCGTGGCCTTGTGGAACCATGCCTCACTGCGACGGGAACTGGAGTTTATCCAGAAATTCCCATTGAAGCTGGTTATTGATGTTCAAAAAATTCCAGGGCAGCATCATCATTTACTGCTAATGTCATGAGCCATCATGCCAGAGACAGGACTATCAATCAGTGTTATTGTGTCCGTTGACTTTCATTACCTTTTCATACTCACCCTGCAAGTGGTGGCGAAATATCTTTTCAAAACACAGGagagcattttaaaaactgaaagaataaatgaaaataaaccaattaagcGAATCTCAACACTGAGCACTGCAATAATAAACCATGTTACTGAAATAATGGTGCAGAAATTGTTTACTCGGCACTAAGAGTTACACAGACTGTTATTAAACACAATCCATTTACACAACTGCAGCCATGAAATTAATAAGTAGTAATAAAATACCTGTATTGGACAAACGCTTCACACTGCAGCACAAAAGGTCACTCACCACCTCCCAACACACGGGCCGACAGCGGAGCGCCGGCCTTTACTGTCCGACTACACCGCGCAGCCGCGTCAGATCGGTTCCGCCGCCGGGGAACTTCCCCTCGAACTTCGAACGCCGTGAATTCTGGAAGCCGGCGTTCTAGAATTCAGTGCGCGTCACTTAATGCCATTTTGTTGCCCTGACACTAGTGCTATGCAGGCAACGTGCATTTAACCTCGTACCTTTAAACGTGGCATTGTCACCCTACACAATGCAGTGGCATATCCCAGTTACCGCAGGGAAAACAACATCCAGACACAACACACGCCAGGAAAAGCTGCTTAGTGTATTCTCCTGTGCGTCTCTCTTCTATGACGTTAAACCTGTGTATGTTGATACACTGCTGTACACACACCAGTGGGAATTGCGTCATTAAGCGTGTTCTTGGTGGTGGTTTGCTGGTGTGTGTTGCTCTGGGCTCGATTAGCGCTCCTGGCAGCGGCGGTAGTAGGAACAGGACGGATCGACGGATCGGAGAGTCGGAGCGGACGCGCTCGGCAAACCCAAACAAACATCCGCACCGAGGGACGGGCAGCGGGGCTCCCGGGGCACCGACACGCACCTCGCCGGCCTCGCACGCCGGGACACCGCCTGCGCCGCGGCCATCGCTCGGAGggatTTCTTCAGCAGAGGCAAAGAATGGCAACATAGGACTAAACCAGAAGACCAGAGAAGATCCTCTCGTTGACTTTCTGCTCTTATTTAACGCTTTGCCAGCCGCAATAAACCGcattaaaaactgtaaacaaCGCATCTCTTCCAAATGCGACCTTTTAAGAATTCTAACTAGGACAAAAAAATCGCCATGGCTGTTTGAAAGCGAACGAGTGTGCCGGCTGCTACACCTGAAGAAAAACCTAAACTGCTTGCTAATTGTAAGACTCATCAGACCCTATCCTGAGGGGTCTGAAGAtagaatgaattaaattaaagggaaaCAACAGGACGAGAAAACGAACCCCACCCTGTCGACAGCGTCACCGTTAGAATGTGTTAGGAGTGGgaaggttctctctctctgtttcttcgGCGGCAAGGAAAGATGCAACTTACATTATAAGTAAGGGTCAAATCACGCCGGGTAATGTGAATATGAAACAGGCTCCCCTTTTTCACCCTGTAGTGGCGACAAAGCAAGTTTAATGAGGTGAACAGAGGTTTTTAGCGGTTTCGTACTGCAGTGCTCTGGGTTCTGTTCCCACCCCTTTTTTCTGTGCATGAGTGCCGGTCCGGATTAAGATGAGTAGGTAAGGAGGCCGTGGCGTGTCAAAGCGGGCACACCGTGCTGCTTCCAGTGCTACAGGAGAAGGGAAAGGCCGTCCTGGCATCTCTGCCGGACACGGGCTGCGATACCGTAGACAGTCTGTGCTTCACCACTAGCTGGGCTGTAGGCTCCAACCAGCCGGATCCTGCAGGAGATCGTGTGTGACGGACGGGTCGGACGATCTAGGGGGATCCACTCCAGATCTCCTTGGACATCGTTGTTGGGGGCTCttgcctgttttattttaaaactgctttgCTCTGTAATGCACCGATTCCCGAAGACGGGCCGGACTTCGTAGATCAAGAGGATCGTCTCGGAGAGATTCATCAGCCGTCTAACTCCAGCACGACGCCGGGAGATCCGTGCGGTCTTCAGAGAGACCGTCTGCCAGCTTCCCCCCGATCAGACCTTTCCCCGGCTTCATCACCGAACGAGATCACCCTGGAATACGTCACCGGCTTCCCAGAGGGGCTGTGTCGTCCTGCGGCTGCAGTGCACACTGTTGCGGACGGGCCGGGTCTCTGCAGGGAAACGTAGTCCGGGGCTTGGCTGTCCGTACCCACGctgagagagagcgggagaggagGGTGCTGGACCTCAGAGCCCACAACTCTGGATCCTGGCCATGAGGTTTGATGCCTCGATCCACTGACTGGAGACTCTGGACCTAGATGGCGCAGCATGACTTTGTTCCTGCCTGGCTTAACTTCTCGACGCCACAACCCGCCAAGTCCCCTTCGGCCACCTTCGAGAAGCATGGAGAGCACTTTCCCCGCGGAGACGGCCGCCCGGGGGTGAGCCGCCGGCGCCACAACTCCTCCGACGGCTTCTTCAACAACGGCCCCCTGCGAGCCCCGGCAGGGGATGGGTGGCAGCAGCCGTCGCTCCTGCGCCACGACTCGGTGGACTCGGGCGTGTCGAAGGGTGGGCATGGCGGTCTGGTCGGCGGGCAGGGCTGGAAGGACTCGACCAGCTGGCACGGGGCGCTGAGGGGGCAGGAGGCCGTGACCTCtcagcaccaccaccaccaccacaaccaccaccacgGCCGCCACCAGAAACGCGGAGGTGGGGACCGGGATCGGGACAGGGACAGGGCCGGGGGACACCGGCATCGCAACGGCAGCTTCCACCCCCGCAAGGGCCCCCCGTTCCAGGACAAGCCCGGCACCGACGGCCGCGAGGAGCGCAAGGAGAGCAAGGAGGACAAGCTGAAGTTCGTGGAGGAGGACTTTCCCTCTCTGAACCCAGAAGCAACTGGAAAGGCGGTGGGCCAGCCGCGGGCTGTGGGGACCCCATTCGGAGTGTGGGAGAATCCCCCCAGTGCCAAGCAGGCCGTGTCCAAGATGCTGGTCATCAAGAAGGTTTCGAAAGAAGACCCCTGCGCCGCTTTCTCTGCCGGGTTCGCGGCCACGGGGCCCCTCCCTGCCAACGGCAACAAAGTCCCCATCACTGGACCCAGCGTTTACAAGAACCTGGTGCCCAAGCCAGCAGCCGCCCCTACTAAGACAGGTCCATGGAAACCCAACGGAAGGGAAACTAAATCGGGTTTACATTTCTCGGGTCGGGATTCTGCCTTCACCAGCCCCGTCTCTGTGACCAAAGCCCTGGCCCCGGCCAGCAGCGCCCCCCACACTGCCCCCAAGGAGGTAAGCCGACGGGCCGCCTCCTCCGCAACCTCTTCCCCCACCCTCTGCCGCCATGGGTCTCCTCACGTGTCGCTTCTATCCCCCCAGACCCCCTCCAGCACCACCCCGCCCATCGACATCACCCCCCCGCGGCTCAAACTGATGCGCCGGGGCACGGACCGCAAGAGCGAGTTCCTGCGGGCGCTGAAGGACGAGAGGAACGGAGAGGGGCCGGCCTGCTGCAGCCCCGGAGCCTCGGGAGAGGTCGAGGGCGGCACTCCCGAGCCCAAGGAGTACGGCGAGGGACTCTGCCACCAGAACGGCgtgtctctgtccctcagtGACTCGGACACCGAGCACCTGTCCAGCTCTCTGGAAGCCGAACACAGGTTGCTGAAGGCCATGGGCTGGCAGGAGTACCCGGAGAATGATGACAACTTCCTGCCGCTGACGGAGGACGAGATGAAAGAGTTCCAGGTCAAGACCGAGCAGTTCGCTCCCTGGAGAAGCACTTTGGACGAGGGCTCGGAGTCGGAGACGAGCAGCAGCCAGACCTCCGATGACGACGACACCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184317 lncRNA downstream 15997 20146085 ~ 20147354 (-) True G146503
TU184289 lncRNA downstream 53821 20108125 ~ 20109530 (-) True G146487
TU184290 lncRNA downstream 55524 20103626 ~ 20107827 (-) True AMCG00005263
TU184270 lncRNA downstream 99938 20062549 ~ 20063413 (-) True G146469
TU184262 lncRNA downstream 111596 20050116 ~ 20051755 (-) True G146461
TU184375 lncRNA upstream 142003 20316060 ~ 20321620 (-) True AMCG00005270
TU184402 lncRNA upstream 318114 20492171 ~ 20494411 (-) False AMCG00005276
TU184406 lncRNA upstream 347592 20521649 ~ 20523818 (-) True G146576
TU184408 lncRNA upstream 360311 20534368 ~ 20535200 (-) True G146578
TU184451 lncRNA upstream 425182 20599239 ~ 20599503 (-) True G146607
AMCG00005269 mRNA downstream 4250 20147412 ~ 20159101 (-) True AMCG00005269
AMCG00005264 mRNA downstream 31612 20127159 ~ 20131739 (-) True AMCG00005264
AMCG00005268 mRNA downstream 36508 20120780 ~ 20126843 (-) True AMCG00005268
AMCG00005263 mRNA downstream 55628 20103626 ~ 20107723 (-) False AMCG00005263
AMCG00005258 mRNA downstream 120008 20030569 ~ 20043343 (-) True AMCG00005258
AMCG00005265 mRNA upstream 1440 20175497 ~ 20180979 (-) True AMCG00005265
AMCG00005266 mRNA upstream 8323 20182380 ~ 20186437 (-) True AMCG00005266
AMCG00005270 mRNA upstream 146534 20320591 ~ 20339165 (-) False AMCG00005270
AMCG00005271 mRNA upstream 196611 20370668 ~ 20391561 (-) True AMCG00005271
AMCG00005276 mRNA upstream 316994 20491051 ~ 20502206 (-) True AMCG00005276
TU184245 other downstream 139844 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 139844 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 401905 19758232 ~ 19761446 (-) True AMCG00005240
TU184064 other downstream 590033 19570059 ~ 19573318 (-) True G146313
TU183873 other downstream 1147688 19014547 ~ 19015663 (-) False AMCG00005214
TU184357 other upstream 100334 20274391 ~ 20279746 (-) True G146532
TU184470 other upstream 435297 20609354 ~ 20610643 (-) True G146618
TU184860 other upstream 1570819 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 1796978 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 1856768 22030825 ~ 22035272 (-) False AMCG00005362

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062805 False 4473 mRNA 0.46 12 NC_007117.7 33881372 ~ 33897961 (+)
grasscarp (Ctenopharyngodon idella) CI01000340_06227847_06235507.mRNA True 2005 mRNA 0.50 10 CI01000340 6227847 ~ 6235903 (+)