RNA id: AMCG00005269


Basic Information

Item Value
RNA id AMCG00005269
length 4242
RNA type mRNA
GC content 0.68
exon number 30
gene id AMCG00005269
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20147412 ~ 20159101 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAGCGCTGGGGGGCTTCCACTGCCGGAGCTGCAACATGGCCTTCCGCTCGCCCGGCCTGCTGGAGACGCACCGGCAGCGCTTCTGCATCGGCAGCGAGATCGGGGACCCCTTCGTCCTGAACCGCGGCCGTGCCGAGGGCCCCTGGAGAGAGGCAGGGCCCAAGAGGACCAACACTCCTGATTTTATAAAGAGGGCGCGGCAATGGGAGGAGAGAGCTGGCGACAGGGACGGGGAGATCCGGGGCAGCCTGTCTGACAGCCTGGCACTGCGGAAGCTGACGGATGAGtttcacaaGCTGAGGCTGTCCCTCGAGGAGAGCCTGCCCTCGGTACCAGGCTGGGTGCAGGCCGAGGAGTCCCGGGTGCCGCCAAGGGAGTGGGAATACAACACTCGGGAGGAGAGGAACGAGTGGGCCCTGCAGCAGCTCTCGGAGCAGATACAGGCGCTGCACGGCCAGCAGGGCACCGCAGCAGCTCCGGTCCAGCCTGGCCCCCCAAGCCCAGCACCCCCCGAGGCGGAGGCCCACACTCTGGAGCGGACTGGCCCGAGGGCAGAGCACAGgggcaagaagaagaagaAAGCGGAGCCCCCCCCGCGGGCCCTGGACTCGGAGCTGCAGGCGGTGGAGCGGGAGAACCAGCGCCTGGAGGAGGACATCCTGAGACTGCAGCTGCAGCGCGAGAGACAGCGGGGCGAGGAGGAAGCAGTAGGGCTGCAGGAGATGCAGAGGGATCACGTGCGACAGATGGCGGCGGTGCAGACGGAGATCGAGAGCCTGCGCAGGGACCTGGAGAGAGGCAGGGACCCCCCCCGGGGCCGGGCGCCACCCCCACCCGTCCCTCCGCCACCTCCACTGCCCCCGCCGCTCCCCCATTACCCTCCTGGGGGGCTCGGACAGCCGCTCCCGCCTCCGGCCACGATGTCAGGCTCAGtggagctgctgctgatgtCATGTTGGCTGTGTGTCCTACAGGAGCGAGTCCAGCCCCCGATTGGTCAACACCTGCTGGAGCCCCCCGAGGCCCTGAGCCCTGCACCCTATGACCCCGTGGCGGGCTTCGTGCTATTCTATGACTTCGTCCTGGGGCTGGAGCCCACGCTGAGTATGGTGCGCCTGGTGGTGGGTCTGTACTCGGGGGGGCAGGAGATGGGCAGGCCCACGCCGCTGCCAGCTGTGTACTGCGAGGTCGGGGGGGGCCTGCCCTACGTCACCACCGGCCACCCTGGAAACATCGCCACGCTGTCGGTCAAACAGCCAGTGCCCAGGGTGCACCCGTCGCCCTCTATCTGCCTGGTGGTGGAGCTGCAGGCGGCGGGCGGCTTCGACTCCTACGGCCAGGAGGTCCAGCGGCTGGTGTCGCGGGGCTGGGCCCGGCTGGACCTCTTCGATCAGCACAACCGGGTCCAGAGCGGCTGGTGGAAGGTCCCGTTCCGCACCCTGCCCGTGCGGCCGGCCCTCAGCACCGGGCAGCTCAACGCAGTCCCCCAGGTGGGCCGTGCGGAGCTGTACCTGCGGGTGGTCAACGCCCGGGACGGGGATATGCAGTCCTTGGCCAACACTGATCCGGGCACTGCCAGCCAGTACAAGTACCCAGCCATGGTATGTGCACCAGCCGGCCTCGGCCCGGTGGCGACCCGCCCCGTGGTCCACCTGGAGAACCCGGCCCCTCGCCACGCCGCTTTTCAGCCCCCAGCCAATCGCTACCTTTCCCTGCTTCCTCCCACTGATCACGTGGACCCTCCTCCCCCCATGGAGGGATCCAATCAGagCGGGCCCGCTCCCACTGGGGAAGGGGTGGCGGGGGTGGGCATCATCGTGGACCGAGTGAGAGGGGCCCCCCTGGGGGACGGCAGCCTGAGACTGACGGGGTACAGCCAGAGGACCGGCAAGGTGATCGAGTGCGGCCTGGCGGGCATGCTGTGCTACACCTCCACAGTGAGCTCCTGCATCAAACACGGGGAGTTCGCCTTTGGAGAGCAGCAGATCTTCTTCCCCGGCGTGCAGCCCCAGAAGGACCAGGTCCTGATCCTGCGCTTCTATCACTGGCCCAGCAGCAGCCCCTCAGCGGCCACCTGCCCCTGGGAGCAGGCCGGCGTCCCAGGGAGTCTGGCCGAGAGAGAGGAGTGCGCCGCGGCCTGGGGGCTCCTCAGGCTGACCCGGCCCCCCGCCCTGGGGCAGACGGAGAGTCCGGCCGGCCGGCAGTGGACCTGGAACACGGGCACTCACTCCGTCGTGCTCTACCATGCGCCTGCCCCCCCCGCCGCCGCGCTCACAGCCCTGTCTGCAGAGCAACAGGTGACACCCTTTGAACCCTACGGGGACGCGTCGGCTCGCATGCACGTCTACAGCGGGGAGAGGCCTGCGTTCCCCTTCCCCCCCGACTCCCCGATCGACACCTCCATCCCCACAGACTGGCCCCAGGCCGCCTACATCCTGTGTCGCAGGGAGAGCCCCCCGGCACGGCCCTTCCTGGCAGGGGACGGGACGGACCTGTACATCGACGGGGCGCGGTTCCTGCCTGACTGCGTGACCGTCAGCAGGGTGACCGGCCGCATCTTCGACAGACACTATAACCAGGTGGGCCCAGACATCTCCACCGGCATCGACCTGGACAGCAACATCTTCGAGCCCGTCTACGGGGAGCGCGTGGAGATCCGCTGCCCCTGCCTGCCCCCCTCTGCCACACTCCTACTGAAGctgtATGCCGTGGACCGTTTCTCTCGCAGGCTGGTGCTGATCGGCTGGGCGGCGCTGGGGCTGTTCGTGGAGTCGGGCAGTGAGACGCAGCCCAGCCTGGACACGGGGGGCCTGCAGgtgtcATTAAACGAGGGGGCCCACCAGCTCAGGCTGTACCACAGCGGCCCCGACCCCAACAAGCCCCTGTCCTGCGGCGCGCTGAGCACAGGGGGCAGCCTGCTGGTGCGCCTGCTGAGAGCCCCCGTGGACGAGAGCGGCCGGGCGCTGAGCCAGGGGGCCGTGGCCCAGGCGGACTGGGAGCCGGTGGGCTTGTTCTGCCCCCGGCCCAGCTACTCCGAGGGTGGGTACTTCTCCGAATCAGCCAAGCCCAGCCAGGGGGAGGCCTGCCTGCACATGGCCATGAGCAACAGGTCTGTGGTGCTGGTCCGGGAGATTGTGGCTCAGCTGGCGGGGAGCCAGGGGGCGGAGCCGAGTTCCGACGCGGAGATATTGGATTGGATCAAGCAGAACACGAGTCGCATGATGGACAGCAAGCCTCAGCCCTTCAACCTGAGCCTGGTGTCTCGCTATCTCAGCTGCTTCGGGGTGAAGGTATCAGTGGACGGGGGCCTCAACTTGCCCTGGTCCTCCTTCACTCTGGCTCTGTGCGCCTTCAGCCCCCCGGCCGCCTTCTACCACGGAGCGTCCGCGGTGAAATATGACAGGCCGGCCATCTTCCAGGAGCTGGACTTCAGCAGCAGCCACAGCGCCCCCCGGTGGCTGGATGGGTTTAAGCCCTTGCTAGCCTCACCCAGCCCCTCTGTGCGCCAGTCTTTCCCCAGGCGGATGCACCACCCATACCTGGCGGTGATCGTCCACCTGCACGCCATGTCCGTCCTCACCAGCAGAGAGACGCAGGCGACCAAGAGCCAGGGCCTCACCTACAGCCTAGAGGGTCAGGCCTGGGCGGCCGTGCCCATCTTTACCCGGGGGTACTGCCACACTGCCCGCTACCAGCTGCCCCTCTACCAGGGAGCCCCTTCGGAGGCTGCCCTCAGCATGCTGTCGCAGGGACCGTGCCACAGCGTCCTGGAGAACCTGAGACAGAAGGGCCAGGTGCAGCTGCTGAGGGGAGCATCTGTGTTTGTGCGAATCGCAGACGGCAGGAGGGACGGGGAGCTGGACAGCTGTGGGGACCAGGACACAGACCTGTCCCAGCTGCCCCTTGACCAGAGAGACTCCTACAGCCCCCAGCCCACGACCGCACCCCTGTCCCAGCTGATCCCCACCGGACGCCCCAGAGACGAGTTTGTAAGGCAGCTGTCCGTGCGCTTCACACAGCTGATCTTCAAGACCCTGAAGGACACACCTGAACACCGTGCACCCATCCTCCTACAGCCCCCGACCCACCCTCCACTGGATCCCAGCAGCCTCCCCCCACAGCCATCAGCAGCCCTGCTCCACTCGGCCTCCCCAGCGGCCCGTCCCCCTTCAGCCACACAGGCCCAGATGGGTGCACCTTCACAGCCCCCCAAACCCAAACTCCCCAGTTCACTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184317 lncRNA downstream 58 20146085 ~ 20147354 (-) True G146503
TU184289 lncRNA downstream 37882 20108125 ~ 20109530 (-) True G146487
TU184290 lncRNA downstream 39585 20103626 ~ 20107827 (-) True AMCG00005263
TU184270 lncRNA downstream 83999 20062549 ~ 20063413 (-) True G146469
TU184261 lncRNA downstream 94491 20050116 ~ 20052921 (-) False G146461
TU184375 lncRNA upstream 156959 20316060 ~ 20321620 (-) True AMCG00005270
TU184402 lncRNA upstream 333070 20492171 ~ 20494411 (-) False AMCG00005276
TU184406 lncRNA upstream 362548 20521649 ~ 20523818 (-) True G146576
TU184408 lncRNA upstream 375267 20534368 ~ 20535200 (-) True G146578
TU184451 lncRNA upstream 440138 20599239 ~ 20599503 (-) True G146607
AMCG00005264 mRNA downstream 15673 20127159 ~ 20131739 (-) True AMCG00005264
AMCG00005268 mRNA downstream 20569 20120780 ~ 20126843 (-) True AMCG00005268
AMCG00005263 mRNA downstream 39689 20103626 ~ 20107723 (-) False AMCG00005263
AMCG00005258 mRNA downstream 104069 20030569 ~ 20043343 (-) True AMCG00005258
AMCG00005259 mRNA downstream 120707 20024174 ~ 20026705 (-) True AMCG00005259
AMCG00005267 mRNA upstream 4250 20163351 ~ 20174057 (-) True AMCG00005267
AMCG00005265 mRNA upstream 16396 20175497 ~ 20180979 (-) True AMCG00005265
AMCG00005266 mRNA upstream 23279 20182380 ~ 20186437 (-) True AMCG00005266
AMCG00005270 mRNA upstream 161490 20320591 ~ 20339165 (-) False AMCG00005270
AMCG00005271 mRNA upstream 211567 20370668 ~ 20391561 (-) True AMCG00005271
TU184245 other downstream 123905 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 123905 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 385966 19758232 ~ 19761446 (-) True AMCG00005240
TU184064 other downstream 574094 19570059 ~ 19573318 (-) True G146313
TU183873 other downstream 1131749 19014547 ~ 19015663 (-) False AMCG00005214
TU184357 other upstream 115290 20274391 ~ 20279746 (-) True G146532
TU184470 other upstream 450253 20609354 ~ 20610643 (-) True G146618
TU184860 other upstream 1585775 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 1811934 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 1871724 22030825 ~ 22035272 (-) False AMCG00005362

Expression Profile