RNA id: TU184375


Basic Information

Item Value
RNA id TU184375
length 4179
lncRNA type sense_over
GC content 0.39
exon number 2
gene id AMCG00005270
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20316060 ~ 20339165 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAAACCATCGCAGAAATGTGCCGGTTGTCATCCGAGACGCTGCCGGACTGCAGCGGGGGAAGAAGTTTTGTAGTCTTAAAGAAGAGCTCGCTTTTTAAACTGTAAGGACTCAAGCCACAggaggtttttttgtttttgttttttttggtatgttttACTTTAGTTTTCAGGCTTTTAGTTTGGCTGGACTTCCAGAACTGGCTAGTTTTCctacaaagcagaaaaaaaagtttctgtcCCGTAGAAACCGACCAAAGTTAGCCTTGGAGAAACTCCACTTAATGAATtaagagaagaaaaagtaaaCTCAAAGATGCTTTGTTTTGTGCCACACATGAAAACCGTTTGGGTTCGCTCTTGTATAACACTAAAGCTCCAAAAGTGTATTCTGAACCAAATTGTACCCACTGAAATTCAGTTTGAAGcacttatttaaaaagtaaaatgtctaCAGCTGCACATTTCAACACCaaattttggaaaacaaaaaaccctgAAACccctttgttttgtgtgtgtggtggaaAATATAAGCGGTCCGTTTTAACATTGGGATGTTATATGCGATTGTTCTTTTATGGAACTTTAATAAGCTTTGAACGATTAAGCAGGTACAGCAGTTTTGCGTTTAAGagtcaaaaaatgttttagcaaATATGAATGGAAGGAAGTGCAATCCGATATTTATTGGTGGGATATACAGCTGCAGTATCCCCTGGTCAGTCGCACAGACAAGGccgaaacaaataaaaaaaattcaaatgcaCAATATACCCTTGAAGAAAACTGATTTTTATACTGGTCCTATTTATGGTGCTTGACTTTATAACCAGTCATCTCATTGGCTGCCTGTTTGGGATTTTTAAGTCGCATTAATAAACTAAAAGTTTTACATTCACAATGGCTATTTAGAGACTTTCTTGCAGGATCCTATCGCTTTTTGCCAGGTTTGATTGATATTTGCAAAGAGGATGGGCAACAAAATTCCTCGACAGCGTCACTGCGCTCCACCGAACCCCTAGCTGACCccttttctatacattttaaccACTGTTGTGGCAATGGTACAACTCAAGGTTATTCCATTACAAATGGGCCAACGCAGCAGCCGGGTTTGCGGTAAAAGATTTTTAAACCGCTTCCCATTCAGGCTTAAACTATTGGCTCGGCCTTCCCAATACACCGGATTATTATGGGTTCTCTTCATGCCAATTGGCTGCTTTTAATGCGTGTTATTTGAGAAGGAAAAGGTGGGGGTGAATCTAATCCAGGTAGTCACTCTCACTGATTTACCCAGAAGCCTTAAggttgcaggtttttttttttttttttggggggggggggATGCCTAAGCCGCCTCTGGCCCATAAACCTCACCCAGCCCTCTCACACCAAGCCAGCATGTCCGGACTGACTGAGGGAACGGCTCGACCGCGCTTTCCTCGGCTGTTGTGCTCCAGTCTATAAACTGTAAATCCATGACTTTATTTGAGTTGATCCCCATTCCCCCACAAGTTGTGTGAGGAACTAATCAGGACTTAAACGGGCCTGTTTCTATTACTTGAACTATTATTGCTCactgttgaatgtttttatgaTGCATATATACAGGTATATAAAATCCTTTTCTGATGATATGGTACACAAGATGGGATTTAAatgtctggtgtgtgtgtgtgtgtgtgtgtgtgtatatatttaaaaaaaaaaaaaaaaaaaaaaaaatcccatggGATTTTTCAATTCTTCTGGCTCAACAGACGAAACGGTCCGTTTTAGAGCATTGGTCATTCTTAAAAGCAACGTTTTGTTTTGCGTTTAATTTTAACACGGTTCGCGTGTCAAATGGTCACGTTAGCGGAGATAAGACCGACACTACACTTTGGTTTAGATCCCAAATGATGGTTTGAAGgagggttttgtgttttttttgcttttgttctgGCATTGAGACCAAAGATTTaagttgaatttaatttgagaCCGATAGTTTGAGGGATATTCTTGAAAAGGTTCTTACAATAAAAAGCGGACgtgctttgtttttctgaatgcCTTTTTGATAAATCCTGTAGTTGGGTTGCCACTTCAGTTAAACCCGATTTTAAATGGTGTTGGGAAATGCCAGCATGGACGGGGTGGTCATCCATATCTGTGCTTTAGATGAGGAAcgatgtctgtgttttgtttaacagaCACTTTTCTCAGATTTAACTGAAGGCTGCGCTTTTCTGAATGCTTTTAACCTTGTAACTGTGCAGGCAAGAAGGATGTAacgaatgtgtttttgtattttgagttttcttttctgaattTTCTTGTCACTTTTATATCAGTGTTTCTGTGACACAACCAACACTTGGTTCACCGGCAGagcgttttttttgttttgttttgtttttttgttttttaaccaatatatgcatttgttttcttcagtttagTCAGTATTGTATTTGCACACGAGCTGGTGCAAATGTCTTTCTCCATTTTAAATGCCTAAAGTCCTCTGTCCCCGGGTACTTGGGCTCGTCTCTCACAAAGTGATTGTCGTTCTCTGCAGGGCAGAAAGCGCTACGATTTGTACTGATCTGTGGGTTCTTGGTTCTTTCActacagatgaaaacaaaaccaaacaacgCAATATCCTTTTGTCTGTTCGCATTTCCAGGGTCAAAAGAGCATTGCTTGTGGTTCAACCAAGAAACTGGCTAAATCCGTGAATGAATGCTGTTGCTTTTTATCACCTGAGGAAAAGACGAAACCAAGCCGAGCAAACCTTGCATAATTTGGGTGGAAAATGATTGATGGTGGATAGACCAAAAGAATATAGTTCATGTTGACATCTTTCCCCGAGTGGTTTCTCTTTAAAAGACTAAGCCGAAGCTCCGGACGGCCAGAGTTTGGCCGATCCCGAACTGCAGCTAGAGCGGTCTGATTGagggaaattaattttgaaattttCAGTTTTCCCCACATAGCCCTGCAAAGTTTTATTTGCAGTTGGGTTTAATATGTTGAATATTTCACCAGGaatctttttcttctgttcatatGACTGCTGGCTTGCACAGAGTCCTGGCCACAGCTTACTAAAGGGATACTGCAtctttaatgaaagaaaacccTGGCTCAccatttttcttccccccttttGACATATTTACAAAAACCCAGCATGCATCTTTGGTACTCttgactgttgtttttttgtggaaaaaaaaaaaaaagttatttgtctGTTAATGGTGTATACAAACTGAATTTAATATAGCTGAGAATACAAGGCACTGCTTAACGCTGCAGCAATTTAGGACCCTGTACAACTGTAGTGGTTTTAAAAAAGattaacatatatacaaaattaaaaaaaaaaaaaaaaaaaaaaagatatatactgAGAAAGAGGCTATTGACCAGAGCAATACAGACTGTTTGGTTGTAATTGTTTCACTTTccctacattttcttttaataaataaaccaaatccTTTGCCAATGCATATTTAAAGCTgtacacaccaaaaaaaaaaaaaaatacatttcaaaacttcctgctttaaatgttttatcatagTGATTGGCTTCGTtgaatattcaattaaaaaaatgctgttcttTGTTGCACCTTATTCAGGTCATTTCAAGGCCTGCTCCGGAAACTTAATTAGGCCAATGACATGactttgtactgtatttgtctGATCACATTAGAttggattatttaaaatacagtataagcAATAACACATTGGCTCTTACAGTCCATCTGTGGACAAAAGTAACTGGTGACACAAGGAGACTAAAATCTCAGTCTCATGCAAATGTGCTTCCATCTTCACTCGGTGAGTTTGAAGTTCACGCTACGTCTGTCCTTTGCTCTCCTGGAAAGCCCTGCCTGTGTCCGACTTACAATCCGCCGATTGGTCGTTGTTGTTGTACAGGATATTACAGACCCCGTTTTGTTATTGCGTTGTTATTGcgtttccttccttccttcgtACATACGGCCTCTTTCTCAGTATCGCAACAATAATTGCTTCAGGCTTCTAGGTatcattcagttacatttttcatcaCAGTACAAATTTTTTCTTGTATCTGTTGCAATAGTTTGTATTGGTTGTAGAAATCTCCATTTGTTATGGGATAAACTCATGTATAACATTGACAAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184317 lncRNA downstream 168706 20146085 ~ 20147354 (-) True G146503
TU184289 lncRNA downstream 206530 20108125 ~ 20109530 (-) True G146487
TU184290 lncRNA downstream 208233 20103626 ~ 20107827 (-) True AMCG00005263
TU184270 lncRNA downstream 252647 20062549 ~ 20063413 (-) True G146469
TU184261 lncRNA downstream 263139 20050116 ~ 20052921 (-) False G146461
TU184402 lncRNA upstream 170551 20492171 ~ 20494411 (-) False AMCG00005276
TU184406 lncRNA upstream 200029 20521649 ~ 20523818 (-) True G146576
TU184408 lncRNA upstream 212748 20534368 ~ 20535200 (-) True G146578
TU184451 lncRNA upstream 277619 20599239 ~ 20599503 (-) True G146607
TU184453 lncRNA upstream 278554 20600174 ~ 20600514 (-) True G146609
AMCG00005266 mRNA downstream 129623 20182380 ~ 20186437 (-) True AMCG00005266
AMCG00005265 mRNA downstream 135081 20175497 ~ 20180979 (-) True AMCG00005265
AMCG00005267 mRNA downstream 142003 20163351 ~ 20174057 (-) True AMCG00005267
AMCG00005269 mRNA downstream 156959 20147412 ~ 20159101 (-) True AMCG00005269
AMCG00005264 mRNA downstream 184321 20127159 ~ 20131739 (-) True AMCG00005264
AMCG00005271 mRNA upstream 49048 20370668 ~ 20391561 (-) True AMCG00005271
AMCG00005276 mRNA upstream 169431 20491051 ~ 20502206 (-) True AMCG00005276
AMCG00005277 mRNA upstream 202426 20524046 ~ 20525301 (-) True AMCG00005277
AMCG00005275 mRNA upstream 220482 20542102 ~ 20547367 (-) True AMCG00005275
AMCG00005294 mRNA upstream 318038 20639658 ~ 20643224 (-) True AMCG00005294
TU184357 other downstream 36314 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 292553 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 292553 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 554614 19758232 ~ 19761446 (-) True AMCG00005240
TU184064 other downstream 742742 19570059 ~ 19573318 (-) True G146313
TU184470 other upstream 287734 20609354 ~ 20610643 (-) True G146618
TU184860 other upstream 1423256 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 1649415 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 1709205 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 1714975 22036595 ~ 22101862 (-) True G147109

Expression Profile