RNA id: AMCG00005271


Basic Information

Item Value
RNA id AMCG00005271
length 945
RNA type mRNA
GC content 0.64
exon number 8
gene id AMCG00005271
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20370668 ~ 20391561 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCCGGACTAGACTCCTCTGCTCAGAGGGAAGGCACATTCCCCTGTCCGCCACACCTGCGCCGGGGCGAGCAACACCGAGGAGAGCCGCGCGCCTGACCCCGCACCGTAGTGCAGCTGCGGCAGCCCGGCGACTCCCCGCTCCCTCCACCGTGGAACTGGATCAGTACGAGCCCCCGGTGTTGGCAGAGGCCTTGCGGACCTATATCCAGGACCTGCCCTCTCCTATCATTCCCGCCGGCATCTACAGTGAACTGGTCTACACTGCCCAGGGAGGTCAGGCCTCATCAATACCGGCCGGGGGAGCCCTGGCGGGGGGTGTGCCTGTGAACGTGGGCAGGCAGAGCGAGATGAAGGTCAACGCGCTGACCGTGATTAGACCAGAGACCCAGAGCATGGAGGAGTGCGGGCAACAGCTCAAGAGAATCCTGGAGTCTCCCAGCGTCCCTCAGCCCAACCACCTGCTCCTGCTGCACCTGACCAGACACCTCTGCCGGGTGACTCAGAGCGGGGCTCAGAGCCAGGCGACGGCAAGGCTTGTGGCCCAGGCCTTCAGTGAGGTCCTCTTCAAGCACTCGCTCTCCAGCGCCGACGTGAACCCGGAGCACCACCTGCGGATCGTGGAGGCGCTCATCGCGGCCGGGGGCCTGGCGGAGATACAGGCGGCTCCAGGTAGGGCCCCACAAGGTTTATCATTCCCTttgcttctgctgctgctggaggccCTGGCACTGGGCCATGGGGCGGCCGGGGAAGTTTCTGGAAGTTTATTCTCGCTGGCCGGAGGGTCGGGCGGCCGTCACTTGAGGTCCCCCCGTGGGACAAGCCCCATCCACAGTCATTTCGATCTAAGCAGGCAGAGCATCGATTTCCAGCTGGTTGATGTCAGTCCGGCCGACACGTCTGAGCTTCAGGGGAACTCGGGAGGAGAGCTTGGTTTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184375 lncRNA downstream 49048 20316060 ~ 20321620 (-) True AMCG00005270
TU184317 lncRNA downstream 223314 20146085 ~ 20147354 (-) True G146503
TU184289 lncRNA downstream 261138 20108125 ~ 20109530 (-) True G146487
TU184290 lncRNA downstream 262841 20103626 ~ 20107827 (-) True AMCG00005263
TU184270 lncRNA downstream 307255 20062549 ~ 20063413 (-) True G146469
TU184402 lncRNA upstream 100610 20492171 ~ 20494411 (-) False AMCG00005276
TU184406 lncRNA upstream 130088 20521649 ~ 20523818 (-) True G146576
TU184408 lncRNA upstream 142807 20534368 ~ 20535200 (-) True G146578
TU184451 lncRNA upstream 207678 20599239 ~ 20599503 (-) True G146607
TU184453 lncRNA upstream 208613 20600174 ~ 20600514 (-) True G146609
AMCG00005270 mRNA downstream 31503 20320591 ~ 20339165 (-) False AMCG00005270
AMCG00005266 mRNA downstream 184231 20182380 ~ 20186437 (-) True AMCG00005266
AMCG00005265 mRNA downstream 189689 20175497 ~ 20180979 (-) True AMCG00005265
AMCG00005267 mRNA downstream 196611 20163351 ~ 20174057 (-) True AMCG00005267
AMCG00005269 mRNA downstream 211567 20147412 ~ 20159101 (-) True AMCG00005269
AMCG00005276 mRNA upstream 99490 20491051 ~ 20502206 (-) True AMCG00005276
AMCG00005277 mRNA upstream 132485 20524046 ~ 20525301 (-) True AMCG00005277
AMCG00005275 mRNA upstream 150541 20542102 ~ 20547367 (-) True AMCG00005275
AMCG00005294 mRNA upstream 248097 20639658 ~ 20643224 (-) True AMCG00005294
AMCG00005295 mRNA upstream 255995 20647556 ~ 20677947 (-) True AMCG00005295
TU184357 other downstream 90922 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 347161 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 347161 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 609222 19758232 ~ 19761446 (-) True AMCG00005240
TU184064 other downstream 797350 19570059 ~ 19573318 (-) True G146313
TU184470 other upstream 217793 20609354 ~ 20610643 (-) True G146618
TU184860 other upstream 1353315 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 1579474 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 1639264 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 1645034 22036595 ~ 22101862 (-) True G147109

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2555112 True 666 lncRNA 0.42 1 NC_050570.1 40291128 ~ 40291793 (-)