RNA id: AMCG00005273


Basic Information

Item Value
RNA id AMCG00005273
length 348
RNA type mRNA
GC content 0.67
exon number 2
gene id AMCG00005273
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20208791 ~ 20209457 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAAGGAGTTTGCCGCCCCCCCGCCGCTACTCTTCAGGAAGCTCAGTAACCCAGACCTGTCGCCCTCCACCGGCAAATCCAAATTGCACCGGCAGCTCAGCCAGGATGACAGCCGGGCGCGCAGGAGCAGCCTGGCCAGCGGACTGACCGGGAAGCAGCTCCTGCCCCTGTCCAGCAGCATGCACAGCGGGGTCAGCCAGTTGACGTGGCAGCAGCCCGGGGATGCCAACAACCTGGTGCGCATGAGGAACCAGTCCCTGGGGCAGTCCGCGCCCTCGCTGACTGCCGGCCTGGTGAGTACAGCCCCGGCACCGCACTcggccacacacacaccgcacACTGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184340 lncRNA upstream 24148 20182354 ~ 20184643 (+) False G146519
TU184288 lncRNA upstream 99250 20108102 ~ 20109541 (+) True G146486
TU184248 lncRNA upstream 182730 20024173 ~ 20026061 (+) True G146450
TU184234 lncRNA upstream 197656 20007416 ~ 20011135 (+) True G146442
TU184126 lncRNA upstream 448000 19760152 ~ 19760791 (+) True G146350
TU184369 lncRNA downstream 106550 20316007 ~ 20333122 (+) True G146544
TU184422 lncRNA downstream 432811 20642268 ~ 20655773 (+) True G146590
TU184426 lncRNA downstream 433315 20642772 ~ 20661600 (+) True G146591
TU184428 lncRNA downstream 433315 20642772 ~ 20712220 (+) False G146591
TU184435 lncRNA downstream 456626 20666083 ~ 20670169 (+) False G146596
AMCG00005260 mRNA upstream 33460 20172733 ~ 20175331 (+) True AMCG00005260
AMCG00005261 mRNA upstream 60507 20141222 ~ 20148284 (+) True AMCG00005261
AMCG00005262 mRNA upstream 68843 20129229 ~ 20139948 (+) True AMCG00005262
AMCG00005255 mRNA upstream 145394 20051949 ~ 20063397 (+) True AMCG00005255
AMCG00005253 mRNA upstream 157674 20047383 ~ 20051117 (+) True AMCG00005253
AMCG00005272 mRNA downstream 43552 20253009 ~ 20279577 (+) True AMCG00005272
AMCG00005274 mRNA downstream 275475 20484932 ~ 20489664 (+) True AMCG00005274
AMCG00005278 mRNA downstream 380289 20589746 ~ 20595754 (+) True AMCG00005278
AMCG00005279 mRNA downstream 388286 20597743 ~ 20627931 (+) True AMCG00005279
AMCG00005286 mRNA downstream 490300 20699757 ~ 20702472 (+) False AMCG00005286
TU184341 other upstream 24148 20182354 ~ 20184643 (+) True G146519
TU184056 other upstream 628984 19579573 ~ 19579807 (+) True G146305
TU183561 other upstream 2437266 17765257 ~ 17771525 (+) True G145932
TU183002 other upstream 4824179 15384243 ~ 15384612 (+) False AMCG00005105
TU182286 other upstream 7427621 12780580 ~ 12781170 (+) True G144940
TU184347 other downstream 64056 20273513 ~ 20279786 (+) False AMCG00005272
TU184405 other downstream 312192 20521649 ~ 20524819 (+) True G146575
TU184436 other downstream 452469 20661926 ~ 20670169 (+) True G146596
TU184446 other downstream 490029 20699486 ~ 20702404 (+) True AMCG00005286
TU184526 other downstream 588001 20797458 ~ 20803180 (+) False AMCG00005280

Expression Profile