RNA id: AMCG00005276


Basic Information

Item Value
RNA id AMCG00005276
length 5039
RNA type mRNA
GC content 0.51
exon number 22
gene id AMCG00005276
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20491051 ~ 20502206 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aggagaggaggagaggaccAGCACCCCGATATGTAGTGGAGGAGTGAAAAAAAAGACGAGAGACAAACCCGTGTCGACATTGGATCATATCTCGTCCTGCGTCTCAGATGGCGACGTGACCTGCGAGCGTGTGAGGAGAGACCTGGAGCGGAGTGGCCCTTGACTGACCCCGGCCACGATGGACACCTGGACCCCCAACCCCCGGGCCAAGCCCTTCATCCCCCGGCAGCAGCGCAGCCTCTACCTCACCTGGAAGTACAAGCTGACCAACAAGAGGGCCGTCCGCAGACTCTGCCAGTCCGGCGCCGTGCTCTTCTTGCTGGTCACTGTGATCGTCAACATTAAGCTCATCCTGGACACCCGGAGAGCTGCTATAGAGGAGGAGGCGGTGCAGGACTACGATGAAGTCCTGCCCAATATGGAGACCCCCCGCCGGCCCCCCAACGGGAGGAAGGTCCTGGATATCGAGGTTTACTCCAGCCGCTCGAAGGTCTACGTGGCAGTGGATGGTACTACTGTTCTGGAGGACGAGATGCGAGAGCAGGGCCGGGGCATCCATGTGATCGTTCTCAATCAGGCCACGGGACACGTGATGGCGAAGCGCGTGTTTGACACCTACTCCCCTCACGAGGACGAGGCCATGATCCTGTTCCTCAACATGGTGACCCGCGGGAGGGTGCTGATCTTCACCATCAAGGACGAAGGGTCCTTCCACTTAAAAGACGCAGCGAAGAGCCTGCTGAAGGGGCTGGGCAGCCAGGTGTCGATGTCTCTGAGCTGGAGGGACATGTGGACTCTGGTGGTGAAAAAAGGAGGCCAGGTGTACGGGGAGAAGCACTCGAAATCCCCGGCTCTGTCCACGTGGGGGGACCCCGTGCTGCTGAAGACCGAGGTGCAGCTCACCGCCTCTGAAGATGCCGAGTGCCACTGGTCCGACACTGAGCTCAACCGGCGCCGGAAGCTCTTCTGCAGTAAAGTCGAGGGCTACGGCAGCATCTGCAGCTGCAAGGACCCGGCGCCCATCGAGTTCAGCCCCGACCCGTTACCAGACAACAGAGTGTACGACGTCCCCGTGGCGGTGATTGCAGGCAACCGACCCAACTACCTGTACAGGATGCTGCGGTCCCTGCTGTCCGCTCAGGGCGTCAACCCCCAGATGATCACGGTCTTCATCGATGGATATTATGAGGAGCCGATGGATGTGGTGGAGCTGTTTGGGCTTAAGGGCGTCCAGCACACGCCCATCAGCATCAAGAACGCCAGGGTGTCTCAGCATTACAAAGCCAGTCTGACGGCGTCCTTCAATCTGCATCCAGATGCCAAGTTTGCAATTGTTCTGGAGGAAGACCTGGACATTTCTATTGATTTCTTCAGCTTCCTGAGCCAGACGATCCACCTGCTGGACGAGGACGACAGCCTGTATTGCATCTCGGCCTGGAACGACCAGGGCTACGAACACACGGCGGAGGACCCCTCGCTGCTGTACCGGGTCGAGAGCATGCCTGGCCTGGGCTGGGTGCTGAAGAAGTCTCTGTACAAGGACGAGCTGGAGTCCAAGTGGCCCACGCCAGAGAAGCTGTGGGACTGGGACATGTGGATGCGGATGCCGGAGCAGAGGAAGGGCCGGGAGTGCATCATTCCCGACATCTCCAGGTCTTATCACTTCGGGATAATTGGCCTGAACATGAACGGATACTTCCATGAAGTCTATTTTAAGAAGCACAAGATCAACACAGTGCCCAACGTGCAGCTGAAGAATGTGGATGGCCTGAAAAAAGACGCTTACGAGGCCGAGATCCAGAGACTGCTAGGGGAGGCCGAGGTGCTCGACCACACCAAGAACCCGTGTGAGGACTCCTTCATCCCCGACACCGAGGGCCGCACCTACTGTCTCCACGTGTGGGACCTGGACGTGCGCGGGAACCACCGGGGCCTGTGGCGGCTGTTCAGGAAGAGGAACCACGTGCTGGTGGTCGCTGTGCCCGTGTCACCTTACGCTGTGAAGAAACCGGCCCAGCTGACTCCGATCCACTTGGAGCCCCCGCCGAAGGAGGAGGGAGCTCCCGTGGAGCAGACGTAACGCGCAGGGTGGGGGGCAGGAGGTGGCGGAGACCCATGTCCCACCGGAGCCGAGTCACAACAGCCATTCGGACCACTACCCCCAGGCTGTCCCGGACCCCGAGCCtgaggggatggggggggcgCATAGGCCGAACGATCTCGCCTGtcttttgcttttgttcagtttttgttgtATCTGAAACGAATGTGCTGAGGTCCCAGGTTTACGTTGTCTCATTGTCCTACAATGACACTAATGAGTCACTGGAGTGCCTGCGAGGGTTTGTTGGCTGTTAGATGAGAAGTATTTTATTTCCGTGTACATTTCCACACCGCGTCGCCTACAGATCATCTGGCAGCCATGCCGAAGACAACAATACCAGTGCAGAGTGgttgatttttaaacattttttaaaggcgTTATAAGATGTGGGGGGTCTGTTGTGAGGCTGGTGCATGCTGGGATTGTCCGGCTGACCGATTAAACAACTGGACACTGCTCTGACTTTACCACCACGGTGCAGCCGAATGGCCGTCGGTGGGACGCAGACTGAGTCGGGGGCAAAAGGGGCGGTTGGACTCGAAGGGGCTTTGTCTGTTGTTGCGTTGTGCGTTCATAAACTGCAGAACTGTGGCTTTTAAAGAAACCCAGCCAGGATGCTTTCGGTACAAACGACGGAGCGCCTTGTTCATGTTGTACataagttgtttatttatttcactggtATCTGCTAGTGTTATATTTCTAATTGTCGTTTAATGAGCTTCTCCATGAACAAAGCCCTAACTGTAACAACCGCTGCAGCAGAACAAAATGCCAAGCGTGACGTTTGCACAAATGTAACTAacttactttttttattattattttatataaacacgTCAGTGGTCTGTCCTGCCGGATTCACGACACGTTTAGTGACTTTGCGTTGTGGATATTCGTATTTATTCCACTACAGTGTCCTTTTAATTTTGATGCCGTTTCGGGTAGAGGCGGTTAACTCCCGTGGATAACGCTGTGGTGACTAACACTGAACGCTATACAGATTTAAACTACAGTTCGGTTCTTTTCTGTGTAAAAATACAAcggttattaatattttatttaaatggtaaCGATCATTTCAGTGATCTTTGGTCGTTAAAGATCGCCTTGAATTTGTCTTTTGTTCAATTTATAAGCTATTGGTTTTAAAGAAACGTGCTCGTTAAGTGTGCAGAGGGAATACGTCAATAGGTCTCCTAATGCAGCTGCAAACGACTGCagtttgtggttatttatgcCAATCATGAGGCCCGAATCGCTGGCGTTCGCTCCCAGCAGTAACGGGCAGCCATGGGGGAATATTATCCATCCGATTGACCGGTGTACACTGCACTTTTATTGCTAACCCTGGATGATCCCTCGGTACTAGCAAGTTAATCTGGGTCGGCCATATCAATATTTTTCTACATTAGGTGAGTGTTTTTGCCGACTGGTGCAATAAACCTAAAAGCATTacaagcttttgtttttatggacTTCTGTTTAGCCCTCGTGCTATTTTAATATCTTAAATGCCTCTGTTCTTTTATGTGTtggatttgtttagttttcgaTGAGAGAAACAACGAATTTGTTACTGACCGTTTTGTATGCCGTGTGCTAACGTGCTGTTCGAGTGCCGGGCGATGTGTCTGTCCTGTGTCCATTTACATCCGGTCCAAAGACCTCTCCGATTGTACAGTTTTATAGGAATCGGGCATGAAATATCTGTATGGCTCTACACAGCTCTTTCTcagcctaaataaataaaataagtgatttttatttatatatctgtgtatatacacacacacacacacacacacacatttagtaTGTTTTAATTACCATGCCTGGTTAATTGAAGTACCAGGATTTGTAGTTGATAACTGTACGGGGTGTGGAAAGTGAAGAGGAAGCTATGTGTCTGAGAATGACTCATACATAGGACTACATGTGATTGGCGTTGCAGAGAGCGTGTTCAGCTGAAGAGAGGTCACACTGACCCCGCTGTTGTGAAGTCCTTTGTCTCCAGGGATGAGCCCTAAACTTCGAAAGTTATTGTCGTCCGGGGGAATTCCATCTGTGTGTGGTAAAGGTATTCACGCCGGTATTTACATATCAGATTACTCTACTGGCCTTCCTGCGTCACCGTGTGACGATGGATCAGTCAGTGCACACGCAGTAACAGAATATGTAACAACCCTGTGCGTACGCTTTCGCTTCTTATTGGTCCACCCACCTGTCCGTTTCGGAATCATGCTAGCCTATAAAACTCATTGCTCATCACCTGATCTCCCGCCCCCTGCCCTGCCCGGCTTGGTTGGCCGACTATGGCAACTCGTGGGTGAAGACTAAAGCTACGGGAGACGCACGATAGATGGTTTTGTGCGCCTTTTGTGTGAGGACCATGTACAGTTTGGGTTCTGTTTTAGTAGAAACTCCTTTCTCTTTTATTATTGCTTAGTCTTTGTACTCGAATACTCCAACTTTTCACGAAAGGGTATTGTTAATCACGAGGTTCCCGTGGTGTGTTTGTTTACCCCCATGTGTGCGCACAGCGTTTCCCTTCTGGTAAAATCAGCATGACGGCTAACCGGTTCTGTGCGAGAGCCTGAAGCTTGTCGACGAGGGGTAAGATCAGGGTGAGTGGgaagtaaagaaagaaaaggaaaaaggtaTCCATAGAGTCCTCCACGCTATGAAAATCCATGCAAATATATGAGGCCAAATCCCTTCCATTTGTTTAAATCCCAGTGTGCTGGATTTGCATCCCGGGCAGCTGACCTATGCAAACCCACGGAGGACGGGTGCAGGAACTCCCTCCGGGCTGCTTTCAAGGCGCCAGCGTAAAGGCACTGACTGCCTTGTGTCAATGTTTGTGCATCGTTGTGGTCATCCGTTGCTTTGCTTCTCAAGAGTGGGAGCCCTGAAGATCACCgggactaaaaaa

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K09666 POMGNT1; beta-1,2-N-acetylglucosaminyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184375 lncRNA downstream 169431 20316060 ~ 20321620 (-) True AMCG00005270
TU184317 lncRNA downstream 343697 20146085 ~ 20147354 (-) True G146503
TU184289 lncRNA downstream 381521 20108125 ~ 20109530 (-) True G146487
TU184290 lncRNA downstream 383224 20103626 ~ 20107827 (-) True AMCG00005263
TU184270 lncRNA downstream 427638 20062549 ~ 20063413 (-) True G146469
TU184406 lncRNA upstream 19443 20521649 ~ 20523818 (-) True G146576
TU184408 lncRNA upstream 32162 20534368 ~ 20535200 (-) True G146578
TU184451 lncRNA upstream 97033 20599239 ~ 20599503 (-) True G146607
TU184453 lncRNA upstream 97968 20600174 ~ 20600514 (-) True G146609
TU184476 lncRNA upstream 131918 20634124 ~ 20636209 (-) True G146623
AMCG00005271 mRNA downstream 99490 20370668 ~ 20391561 (-) True AMCG00005271
AMCG00005270 mRNA downstream 151886 20320591 ~ 20339165 (-) False AMCG00005270
AMCG00005266 mRNA downstream 304614 20182380 ~ 20186437 (-) True AMCG00005266
AMCG00005265 mRNA downstream 310072 20175497 ~ 20180979 (-) True AMCG00005265
AMCG00005267 mRNA downstream 316994 20163351 ~ 20174057 (-) True AMCG00005267
AMCG00005277 mRNA upstream 21840 20524046 ~ 20525301 (-) True AMCG00005277
AMCG00005275 mRNA upstream 39896 20542102 ~ 20547367 (-) True AMCG00005275
AMCG00005294 mRNA upstream 137452 20639658 ~ 20643224 (-) True AMCG00005294
AMCG00005295 mRNA upstream 145350 20647556 ~ 20677947 (-) True AMCG00005295
AMCG00005293 mRNA upstream 206580 20708786 ~ 20709969 (-) True AMCG00005293
TU184357 other downstream 211305 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 467544 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 467544 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 729605 19758232 ~ 19761446 (-) True AMCG00005240
TU184064 other downstream 917733 19570059 ~ 19573318 (-) True G146313
TU184470 other upstream 107148 20609354 ~ 20610643 (-) True G146618
TU184860 other upstream 1242670 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 1468829 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 1528619 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 1534389 22036595 ~ 22101862 (-) True G147109

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000340_05781697_05792066.mRNA True 3419 mRNA 0.43 21 CI01000340 5780852 ~ 5792678 (+)