RNA id: TU184402


Basic Information

Item Value
RNA id TU184402
length 2064
lncRNA type sense_over
GC content 0.47
exon number 2
gene id AMCG00005276
representative False

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20491051 ~ 20502206 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCGTgacgcctctctctctccccccccgcAGTGTCTCCACGTGTGGGACCTGGACGTGCGCGGGAACCACCGGGGCCTGTGGCGGCTGTTCAGGAAGAGGAACCACGTGCTGGTGGTCGCTGTGCCCGTGTCACCTTACGCTGTGAAGAAACCGGCCCAGCTGACTCCGATCCACTTGGAGCCCCCGCCGAAGGAGGAGGGAGCTCCCGTGGAGCAGACGTAACGCGCAGGGTGGGGGGCAGGAGGTGGCGGAGACCCATGTCCCACCGGAGCCGAGTCACAACAGCCATTCGGACCACTACCCCCAGGCTGTCCCGGACCCCGAGCCtgaggggatggggggggcgCATAGGCCGAACGATCTCGCCTGtcttttgcttttgttcagtttttgttgtATCTGAAACGAATGTGCTGAGGTCCCAGGTTTACGTTGTCTCATTGTCCTACAATGACACTAATGAGTCACTGGAGTGCCTGCGAGGGTTTGTTGGCTGTTAGATGAGAAGTATTTTATTTCCGTGTACATTTCCACACCGCGTCGCCTACAGATCATCTGGCAGCCATGCCGAAGACAACAATACCAGTGCAGAGTGgttgatttttaaacattttttaaaggcgTTATAAGATGTGGGGGGTCTGTTGTGAGGCTGGTGCATGCTGGGATTGTCCGGCTGACCGATTAAACAACTGGACACTGCTCTGACTTTACCACCACGGTGCAGCCGAATGGCCGTCGGTGGGACGCAGACTGAGTCGGGGGCAAAAGGGGCGGTTGGACTCGAAGGGGCTTTGTCTGTTGTTGCGTTGTGCGTTCATAAACTGCAGAACTGTGGCTTTTAAAGAAACCCAGCCAGGATGCTTTCGGTACAAACGACGGAGCGCCTTGTTCATGTTGTACataagttgtttatttatttcactggtATCTGCTAGTGTTATATTTCTAATTGTCGTTTAATGAGCTTCTCCATGAACAAAGCCCTAACTGTAACAACCGCTGCAGCAGAACAAAATGCCAAGCGTGACGTTTGCACAAATGTAACTAacttactttttttattattattttatataaacacgTCAGTGGTCTGTCCTGCCGGATTCACGACACGTTTAGTGACTTTGCGTTGTGGATATTCGTATTTATTCCACTACAGTGTCCTTTTAATTTTGATGCCGTTTCGGGTAGAGGCGGTTAACTCCCGTGGATAACGCTGTGGTGACTAACACTGAACGCTATACAGATTTAAACTACAGTTCGGTTCTTTTCTGTGTAAAAATACAAcggttattaatattttatttaaatggtaaCGATCATTTCAGTGATCTTTGGTCGTTAAAGATCGCCTTGAATTTGTCTTTTGTTCAATTTATAAGCTATTGGTTTTAAAGAAACGTGCTCGTTAAGTGTGCAGAGGGAATACGTCAATAGGTCTCCTAATGCAGCTGCAAACGACTGCagtttgtggttatttatgcCAATCATGAGGCCCGAATCGCTGGCGTTCGCTCCCAGCAGTAACGGGCAGCCATGGGGGAATATTATCCATCCGATTGACCGGTGTACACTGCACTTTTATTGCTAACCCTGGATGATCCCTCGGTACTAGCAAGTTAATCTGGGTCGGCCATATCAATATTTTTCTACATTAGGTGAGTGTTTTTGCCGACTGGTGCAATAAACCTAAAAGCATTacaagcttttgtttttatggacTTCTGTTTAGCCCTCGTGCTATTTTAATATCTTAAATGCCTCTGTTCTTTTATGTGTtggatttgtttagttttcgaTGAGAGAAACAACGAATTTGTTACTGACCGTTTTGTATGCCGTGTGCTAACGTGCTGTTCGAGTGCCGGGCGATGTGTCTGTCCTGTGTCCATTTACATCCGGTCCAAAGACCTCTCCGATTGTACAGTTTTATAGGAATCGGGCATGAAATATCTGTATGGCTCTACACAGCTCTTTCTcagcctaaataaataaaataagtgatttttatttatatatctgtgtatatacacacacacacacacacacacacattta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184375 lncRNA downstream 170551 20316060 ~ 20321620 (-) True AMCG00005270
TU184317 lncRNA downstream 344817 20146085 ~ 20147354 (-) True G146503
TU184289 lncRNA downstream 382641 20108125 ~ 20109530 (-) True G146487
TU184290 lncRNA downstream 384344 20103626 ~ 20107827 (-) True AMCG00005263
TU184270 lncRNA downstream 428758 20062549 ~ 20063413 (-) True G146469
TU184406 lncRNA upstream 27238 20521649 ~ 20523818 (-) True G146576
TU184408 lncRNA upstream 39957 20534368 ~ 20535200 (-) True G146578
TU184451 lncRNA upstream 104828 20599239 ~ 20599503 (-) True G146607
TU184453 lncRNA upstream 105763 20600174 ~ 20600514 (-) True G146609
TU184476 lncRNA upstream 139713 20634124 ~ 20636209 (-) True G146623
AMCG00005271 mRNA downstream 100610 20370668 ~ 20391561 (-) True AMCG00005271
AMCG00005270 mRNA downstream 153006 20320591 ~ 20339165 (-) False AMCG00005270
AMCG00005266 mRNA downstream 305734 20182380 ~ 20186437 (-) True AMCG00005266
AMCG00005265 mRNA downstream 311192 20175497 ~ 20180979 (-) True AMCG00005265
AMCG00005267 mRNA downstream 318114 20163351 ~ 20174057 (-) True AMCG00005267
AMCG00005277 mRNA upstream 29635 20524046 ~ 20525301 (-) True AMCG00005277
AMCG00005275 mRNA upstream 47691 20542102 ~ 20547367 (-) True AMCG00005275
AMCG00005294 mRNA upstream 145247 20639658 ~ 20643224 (-) True AMCG00005294
AMCG00005295 mRNA upstream 153145 20647556 ~ 20677947 (-) True AMCG00005295
AMCG00005293 mRNA upstream 214375 20708786 ~ 20709969 (-) True AMCG00005293
TU184357 other downstream 212425 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 468664 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 468664 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 730725 19758232 ~ 19761446 (-) True AMCG00005240
TU184064 other downstream 918853 19570059 ~ 19573318 (-) True G146313
TU184470 other upstream 114943 20609354 ~ 20610643 (-) True G146618
TU184860 other upstream 1250465 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 1476624 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 1536414 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 1542184 22036595 ~ 22101862 (-) True G147109

Expression Profile