RNA id: AMCG00005282


Basic Information

Item Value
RNA id AMCG00005282
length 2747
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00005282
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20781308 ~ 20794020 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAGAGCTGAACACAGGCAGCGCTGCCAGTCACCGCACAGCAGCAGCGGCTGTGTCTCTGCCTTGTGTTTTTCCTCAACTTAAATCTCTCCTTTTGAAATCGCggggctttgtgtgtgtgtgtgtgtgtgtgatgtggaCTTGGATGTGGAGTGGAAAAGACATCATGAACCACGATGATTGAAGAACTATACAAACGGGTCTCTCTGTGGGATGACAGCACTCATATGTCAACTTAAACAAGTCCATGGATTCAGTATAGAGACACAGAAATAAAGCAGGGGATTCTACTTGCGACAGGAGACACCTCAGTCGGAGCCGGTGTAATTGATCAATTAGTGTTAATTGGATTGTTATACTGGACCAGACTCGCGTCTGTGAAGATGACTATTGTTTCTTAGAGCTCGTCTTCAGAAATGGGCAGGACTCTGAAAGGCAACCGAGATCTGATGTACACAGACTGAAGAGCGTCCCGGGCAGGACTTACTGGTCAAGAGTCGCTCCTTCCCCGGCCCCGGGAGCTGCAGCGGATCTGTCCCGTGTCCTGAACTGAAGCGCCCGTTCACACCCGCCCCCCATGGGACCCTGCAAGCGGAGGGTGGATGATAACATCAGATAGTGGCGCCCCCCGGTTCCCTACAAGGATCATGCCTTCCCTGCACCATGGGACCATTTTCATCGGGGTGTTCCTCATCGTCACCGGGGGGTCGACGGCTTTCCTGGGTTCCAACCAGAACAAAATGCAGGTGTTCAGTCTCAGCTGCGTGGTGATGGGCGCCATCCTGCTGATCCTGGGGCTGTTCTGGTCGATGCGAACGAAGAACCCGTCCGGCACCATCGTCAACAGCTACGGCCAGGTGCTCTTCACGCCCCCCGGGGGTGGCATGGACTGGAATGGAAGCCCCCTCCCGGAGTCGCAGGCTGTCATGCTCCGGAGGACTCTTGAGCGGATGCACCACCCCAATTACCCGGAGAATGAAGTTGACTACCCCCCCCTTGACCCCAGGACCTGCATGGCCGGCCGGCACCCACACTGGGACATGGACCAGCCCCCCCCCTACGAAATGGCCATCAAGACCACGAAGAGCTCCACACACCTGCGCCGCTGCTGCTCCGACTCCCAGCTGCCCACGGAGCCGCTGTTCGGCGCGTCCAGAGAGGTCAGCTTCGAGGTGTAGGACCGGAGCAGCGCTGTTCACGGAGACACGCCTCAGCTGCTTCTAGAGAACCTGCGCACTCACAGTCCGAACAGCCACTCCAACCCCCCGCTCTGACACACAGCAGGCCAGGCTGAGGGGCCACTGTTCATGGGTTCCCTGGAGGCTCTTAACCTACCCAGGATCTCTGACCCACATCTGGACAGACTGCAGGACTCAGGACAGGGTGGTttatacacagagacacacagacacacacccacacaagcacacacacaatcactcaacacacacaaccacatacacacacatgctcagaGCAGCACAAAAGTTCAAAAGTTCAAAAGTAGGTTTAATTGCATTAGACTCAGCATTAACATTGACTTCACCACAAGCTGCCTTTGCGCTGCTAATGACTTCCTGATGGCAGCTGAACCACAATGCAACAGCAAGACCAAACAACCCCTAATGTATGCAATTCACACACTGCCTCGAAACTGCCAAAGCCCTTCTCACACACTCAGTGGTTGTCTTTCTGACTGCGGGTGTTGTCTCATGCTCTGACCGTCACCCCACGGTGGGCAGGCCTGGGCCAGGGGACTCACACcatcttataataataataataataataataataataataataataataataataataataatatctttaTTTATAGAGCACTCATCAAGCTCAAAGCACTAAGTGCTGCACCATCAATTAAAAACCACTAAAGTTAAAACAGGATATAcgaggaaataaattaaaaagaacaagatGCATTAGGaatgtacattaaaaatgtaaaacaataagcTCATGAAAATAATCAGAGAACAAATgcagcatgtaaaataaaacaaaaaaacaatgctttgcATGTGattagtaaaacatttaaatcaattctaaaGTGTACCGGCAACCAGTGTAGAGAGGCTAGTACTGGGGTCGTGTGTGAGGATGTTTTGGTCCTGCAGCAGAATTTCTAAGTTGGTAAAAACATGACTGAACCAgtttttttatatgattttcaaaatgtaaattggaGTCAACGATCACTCCTAGATTTCTAAAGACTGGTTTAATGTTGGGGGCTTGGGACCCAAGATTCACTTGGAGTCATCTGGAGATCTTCTCAGGGCCGATAATGAgaaattttgttttgtctgagtTCAGCTGAAGACAATTATAGGACATCCGGTGTTTTATATCTGCAATACAGTCCTGTAAAATAGCAACTTTGCTGAAGTCATTAGGTTTGACTGAGAGGTAAAGCTGAGTATCGTCCGCATATcaattaaaattttatttttgctgatgAATGATATGACCCAATGGTAGCATGTATAGTGAGAACAACACAGGCCCCAGTACCGAGCCTTGCAGCACACCTGACCACACGCAAGTACGACTGTGGACCATACATGATTGCCAATACAAACTGAATTCCCTGTAGCTTGATTACTGAATCGGAGGCTGTATTTCCAAAACTGAACCAAATTCAGCATCCAGGTCATCAGAGAGTGCCTGGCAGAGTCTGTGGGACTGAGGGGGGTCACTATGGGGGTCCCCTCAGGACCGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184498 lncRNA upstream 30370 20750304 ~ 20750938 (+) True G146640
TU184443 lncRNA upstream 42987 20682625 ~ 20738321 (+) False G146599
TU184428 lncRNA upstream 69088 20642772 ~ 20712220 (+) False G146591
TU184567 lncRNA downstream 61691 20855711 ~ 20855918 (+) True G146701
TU184569 lncRNA downstream 73186 20867206 ~ 20867406 (+) True G146703
TU184620 lncRNA downstream 269953 21063973 ~ 21064908 (+) True G146749
TU184664 lncRNA downstream 532512 21326532 ~ 21328902 (+) True G146782
TU184706 lncRNA downstream 604656 21398676 ~ 21398971 (+) True G146815
AMCG00005288 mRNA upstream 12328 20763632 ~ 20768980 (+) True AMCG00005288
AMCG00005287 mRNA upstream 39007 20741178 ~ 20742301 (+) True AMCG00005287
AMCG00005286 mRNA upstream 78836 20699757 ~ 20702472 (+) False AMCG00005286
AMCG00005279 mRNA upstream 153377 20597743 ~ 20627931 (+) True AMCG00005279
AMCG00005278 mRNA upstream 185554 20589746 ~ 20595754 (+) True AMCG00005278
AMCG00005280 mRNA downstream 3548 20797568 ~ 20803197 (+) True AMCG00005280
AMCG00005281 mRNA downstream 9601 20803621 ~ 20806381 (+) True AMCG00005281
AMCG00005283 mRNA downstream 13181 20807201 ~ 20814750 (+) True AMCG00005283
AMCG00005284 mRNA downstream 56884 20850904 ~ 20854030 (+) True AMCG00005284
AMCG00005302 mRNA downstream 228184 21022204 ~ 21031993 (+) True AMCG00005302
TU184446 other upstream 78904 20699486 ~ 20702404 (+) True AMCG00005286
TU184436 other upstream 111139 20661926 ~ 20670169 (+) True G146596
TU184405 other upstream 256489 20521649 ~ 20524819 (+) True G146575
TU184347 other upstream 501522 20273513 ~ 20279786 (+) False AMCG00005272
TU184341 other upstream 596665 20182354 ~ 20184643 (+) True G146519
TU184526 other downstream 3438 20797458 ~ 20803180 (+) False AMCG00005280
TU184679 other downstream 543412 21337432 ~ 21340712 (+) True G146790
TU184762 other downstream 776510 21570530 ~ 21572321 (+) True AMCG00005329
TU184830 other downstream 886688 21680708 ~ 21704394 (+) True AMCG00005340
TU184875 other downstream 1017712 21811732 ~ 21848136 (+) True G146952

Expression Profile