RNA id: AMCG00005283


Basic Information

Item Value
RNA id AMCG00005283
length 3220
RNA type mRNA
GC content 0.59
exon number 11
gene id AMCG00005283
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20807201 ~ 20814750 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggggggctctgtgAAACCCGACTCCGCAGGTAATTCATTAACAGACAGGATCGTCCGATTCCGCGGGGGTGGCGTGACCCCCCAGGACGTCACCAGGCCCCGCCCAGGGGGGGTAGCCCAAACCCACGCGCTTATTGTCCcagaaacagattttttgtATATTGGGGGAAATAGCTGCCATTGTATTGAAGTGTCATTATCGCCGCCTGGCGCACACACCTCGGAGCCCCGCAGGAGCAGTGTCGCATGTCGCATGGACTGAGCGAGGGATCGCTGCTGCTGCTCCGGTTTGTCGTCGTGTTTGCTGGGACGTTGAGGGGCATGCCGCGCCGGGGCGCACATTGCGCGCTGCTCTCCGCGCTGCTCTGCGGGGCGCTGGTCCAGCTGGCCGTCCCTGCGGCCTCGGAGGCGGACAGCGAGGATGACGAGCTCATCCTgtccctgatcctgcaggacgACACGCAGCCCGAGCCCGGAACCGAGCCGTCGGTCCCTTTCTACCGGTGCCACAAGGAGGGGTGGAGGCTGCCCGGGCAGTACCTGGTGGTGATGCGGGACGGGACGCATGAGTCGCAGGTGGAGCGCACCGGGCGGCGGCTGAGGGCCAAGGCGGCCAAGCGAGGCTACCTGACGGACATCGGGCAGACCTTCTCCGGGGCCTTCCACGGGTTCCTGGTCAAGATGAGCAGCGACGTGCTGCACCTGGCTCTGAAGCTGCCTCATGTGGCCTACATAGAAGAGGACTCGTCCATCTTCGCTCAGAGCATCCCCTGGAACCTGGACAGGATTGTGCAGACGCAGCACGCAGCTGGCAAATACACTCCCCCAAACGACGGGGGCCAGGTGGAGGTGTATCTGCTGGACAGCAGCGTGCAGAGCGGCCACCGTGAGATCGAGGGCAGGGTCCTCGTCACCGACTTCGACAGCGTGCCCGAGGAGGACGGCACCCGCGCCAGTCAGTGCGACAGCCACGGCACACACATGGCGGGGGTGCTGAGCGGCCGGGACTCTGGCGTGGCCAGGGGGGCCGGCGTGCGCAGCGTCAGGGTGCTGAACTGCCAGGGCAAGGGCACCGTGTCGGGGGCAGACCAGCCCATGATCGTGGGCAACCTGGGGACGAATTTCGGCCGCTGTGTGGACCTGTTCGCCCCTGGGGACGACATCGTCAGCGCCTCCAGCGACTGCCCCACTTGCTTCACCTCCAAGAGCGGCACCTCACAGGCCGCGGCACACGTGGCTGGCATTGCCGCTGTGATCTTTAACGCCACCCCCAACACCACGGCGGTCGGGCTCCTGCAGAAGCTGCTGCACTACACGGTGAAGCACGCCATGGACGCCCATGTCCTGCCACCGGAGCACCGCCTCAGCACGCCCAACATGGTGGCAGGCCTGCCCCCACCTGGCGccacaggggaggaGCTGCTGTGCCGCTCGGTATGGTCCCCCCGCTCGGGCGTGTCCCGCTCCGCCACCACCTCCGCCCACTGCCGCCCCGGTGAGGAGATGTTCAGCTGCTCCAGCTTCTCCCCCAGCGGCCGCAGGAAGGGCGAGCACATCCAGGAGCAGGACGGGCAGAAGCAGTGCGTGGCCCACAACGCGTTTGGGGGAGAGGGGGTCTATGCCATCGCCCGCTGCTGCACCTGGGAGGGGGCACGGTGCCAGGTTCATGCCAGCGAGGGGCCGGGGGGCGCAGGGGCCGAGTGCGAGAGCGAGGACCACCTGCTGACGGGCTGCAGCTCCCGCTCGTTGTCGGGGGACACATCAGATGCCGTCCGCCCTCTCCACGGCACCCGAAAGGCGTGTTCGGGGGGAGAAGACGTAACCACACACGCTTCCTGCTGCCACGCCCCCCGCCTGGAGTGCCGTGTGAAGGAGCACGCGCCCCCCGGGTTCAGTGAGGAGgtgtcCGTGTCGTGTGAGGATGGCTGGACGCTGACGGGCTGCAGCGCGGTGTCGCGGGGCTCCCTGACCCACGGCGTGTACCCGCGGGACAACAGCTGCATGGTCGCCAGCTCGGGAGGGGGCAAGGGCGCCGCAGCCATCGCCACCTGCTGCCgcaacagccaatcacagagcagcacgGCCGGCAGCAACCACAAATAGCCCCGGCCCCTCAGGCAGCCTCATCTGAGCTCCAGTCTTCCAGGGCCGTGGGGAATTGTTGTCCCCCATGGTTTTAACACACGTGTATTTTGCTTGGCCATGGTTCGTACCCAGGTGCTCCACACTATACCTCTCCGGGTCCGATCACCACCTCACTTTGCCTTCCTGTTGGTCTCACCACTGTCACAGCCGTTTCCCAACCTTGTCAAACCCAAGACACCCCCATTGAGTTCACACCGTGTGTAGTGGGGACTCTGGGGTGACCGGTCCATCCACTCTAAACATCCTCAGGCTCGCGTTCCTACAGTTATGGGCTCAATTCATCTTCTAACGAACACCTATAGAAATCCACTCAGACACTCCTGTACTTTGCCCGCCAGCAGATATAACTGGACTCACAAAGCGTGGGACAGAACCTCTCCAGAGATTTGTAGATTGACATGCGTCATCATATTCAATTCGATATTTACTTTGGAGGAATCAAGTCAGGgcaaataatattgaaaatgatATTGGCATGTATGCTTTTTTATATGGAAACAAAGTAACTATTATTGCGTGAGTGGGTTTTTTCGTTCTCCTTTGTGCGGCATGTCTCAATTATCGCTGGCGGATTGTGTTGTTCAGATCATCTGTGTTGAAACTAAAACCACAATGTTACAGGAGCAGGTGATGCTGCCTGAAGCACATTATGAAACCGGAAGGTCCTGATTTTGGTaaaaactttttgtttgtttagattataatttggaaattaaataaaccaataaatgaCTAAGTTAACCTGCGGAGCTGAGGGGTAGTGAAACAAACTACTAAGTTCATGTAATTTCATTCTTCATCATATTCAGCATGTGTGTTACAATTGTAACCAAAGCCGAAGCCATCgtaaattaaaattgtgaagCTCAAATTATAGATGGACAATAGACAAGGACAGAGAAATTACAGATTTGATAGTTTGCCGCAACACTGCCAAAATGACGACACTATATTGCATAGTCTATGCATGCAGCGAACCAGAGTCCCCATGTGTCCCTTGTAGCATAAAGTTCACTGTGTTTGtacatattttgaattatttctatgaatctttttaaataaatgattaaaagaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
K13050 PCSK9; proprotein convertase subtilisin/kexin type 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184498 lncRNA upstream 56263 20750304 ~ 20750938 (+) True G146640
TU184443 lncRNA upstream 68880 20682625 ~ 20738321 (+) False G146599
TU184428 lncRNA upstream 94981 20642772 ~ 20712220 (+) False G146591
TU184567 lncRNA downstream 40961 20855711 ~ 20855918 (+) True G146701
TU184569 lncRNA downstream 52456 20867206 ~ 20867406 (+) True G146703
TU184620 lncRNA downstream 249223 21063973 ~ 21064908 (+) True G146749
TU184664 lncRNA downstream 511782 21326532 ~ 21328902 (+) True G146782
TU184706 lncRNA downstream 583926 21398676 ~ 21398971 (+) True G146815
AMCG00005281 mRNA upstream 820 20803621 ~ 20806381 (+) True AMCG00005281
AMCG00005280 mRNA upstream 4004 20797568 ~ 20803197 (+) True AMCG00005280
AMCG00005282 mRNA upstream 13181 20781308 ~ 20794020 (+) True AMCG00005282
AMCG00005288 mRNA upstream 38221 20763632 ~ 20768980 (+) True AMCG00005288
AMCG00005287 mRNA upstream 64900 20741178 ~ 20742301 (+) True AMCG00005287
AMCG00005284 mRNA downstream 36154 20850904 ~ 20854030 (+) True AMCG00005284
AMCG00005302 mRNA downstream 207454 21022204 ~ 21031993 (+) True AMCG00005302
AMCG00005303 mRNA downstream 235727 21050477 ~ 21059289 (+) True AMCG00005303
AMCG00005311 mRNA downstream 588724 21403474 ~ 21457237 (+) True AMCG00005311
AMCG00005325 mRNA downstream 650818 21465568 ~ 21479216 (+) True AMCG00005325
TU184526 other upstream 4021 20797458 ~ 20803180 (+) False AMCG00005280
TU184446 other upstream 104797 20699486 ~ 20702404 (+) True AMCG00005286
TU184436 other upstream 137032 20661926 ~ 20670169 (+) True G146596
TU184405 other upstream 282382 20521649 ~ 20524819 (+) True G146575
TU184347 other upstream 527415 20273513 ~ 20279786 (+) False AMCG00005272
TU184679 other downstream 522682 21337432 ~ 21340712 (+) True G146790
TU184762 other downstream 755780 21570530 ~ 21572321 (+) True AMCG00005329
TU184830 other downstream 865958 21680708 ~ 21704394 (+) True AMCG00005340
TU184875 other downstream 996982 21811732 ~ 21848136 (+) True G146952
TU184903 other downstream 1070520 21885270 ~ 21887445 (+) False AMCG00005345

Expression Profile