RNA id: TU184446



Basic Information


Item Value
RNA id TU184446
length 795
RNA type TUCP
GC content 0.42
exon number 3
gene id AMCG00005286
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20699486 ~ 20702472 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GggagaagtaaaaataaaaaaaatatacacagataagtatataaaaaacatacagaaaaatatgaattgacaTAGATGAAGAAAACCTTCTTGTATTACTGTcaatatttgcattatatatataagacattattaataaaatattccttTGAGACTTGAAGAATCAcccataaatacatattctgatGTCACAGATGGCATCCCTGTGCTGTATTTTGCTTGGTTGTGTACAGAGCTCTGCTATCCTTTATAAAGTTTGTCTTGTCAtcagggagaaagagaggctGATGAAGGAAATCAGGAATTTAAAGCCACCAGGGGAGGAATGGTCAGAATTCAGGATCCTGATGCACGGGCAGATCAGCGCTGGGAAGTCCAGTTTCCTCAACACAGTTGGATCCATCTTCCAGGAACGCATCGTATCCCGGGCAATAGTTGGTGTGGGCAGTACGAGTGTTACCAAGAAGTTTACTCCCTACCGTTTGAGAGATAAAAAAACAGGATCGTATCTGCCTTTCGCTCTGTGTGACGTCATGGGCATGGAGACCAGAGATGGGCAGTGGACACTTCCTGAGGACATCATCAGTGCAGCTAAAGGACACATGAAAGACGGATACGAGtTTAATCCTGCATCACCCCTGAAACATGACCCCAGTGAGAAACCCCCTGTGACAGATCAGGCTCACTGCATCATCTACATTGTGGCAGCGGATCAATTAAGCCTCCTGTCAGATAATATTCTGGATAAGTTGAAGAGAGTCCGCAATGAGCTCAGTGATTTGGGTGAGGCAGTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU184442 lncRNA upstream 15502 20682625 ~ 20683984 (+) True G146599
TU184435 lncRNA upstream 29317 20666083 ~ 20670169 (+) False G146596
TU184426 lncRNA upstream 37886 20642772 ~ 20661600 (+) True G146591
TU184422 lncRNA upstream 43713 20642268 ~ 20655773 (+) True G146590
TU184369 lncRNA upstream 366364 20316007 ~ 20333122 (+) True G146544
TU184498 lncRNA downstream 47900 20750304 ~ 20750938 (+) True G146640
TU184567 lncRNA downstream 153307 20855711 ~ 20855918 (+) True G146701
TU184569 lncRNA downstream 164802 20867206 ~ 20867406 (+) True G146703
TU184620 lncRNA downstream 361569 21063973 ~ 21064908 (+) True G146749
TU184664 lncRNA downstream 624128 21326532 ~ 21328902 (+) True G146782
AMCG00005279 mRNA upstream 71555 20597743 ~ 20627931 (+) True AMCG00005279
AMCG00005278 mRNA upstream 103732 20589746 ~ 20595754 (+) True AMCG00005278
AMCG00005274 mRNA upstream 209822 20484932 ~ 20489664 (+) True AMCG00005274
AMCG00005272 mRNA upstream 419909 20253009 ~ 20279577 (+) True AMCG00005272
AMCG00005273 mRNA upstream 490029 20208791 ~ 20209457 (+) True AMCG00005273
AMCG00005287 mRNA downstream 38774 20741178 ~ 20742301 (+) True AMCG00005287
AMCG00005288 mRNA downstream 61228 20763632 ~ 20768980 (+) True AMCG00005288
AMCG00005282 mRNA downstream 78904 20781308 ~ 20794020 (+) True AMCG00005282
AMCG00005280 mRNA downstream 95164 20797568 ~ 20803197 (+) True AMCG00005280
AMCG00005281 mRNA downstream 101217 20803621 ~ 20806381 (+) True AMCG00005281
TU184436 other upstream 29317 20661926 ~ 20670169 (+) True G146596
TU184405 other upstream 174667 20521649 ~ 20524819 (+) True G146575
TU184347 other upstream 419700 20273513 ~ 20279786 (+) False AMCG00005272
TU184341 other upstream 514843 20182354 ~ 20184643 (+) True G146519
TU184056 other upstream 1119679 19579573 ~ 19579807 (+) True G146305
TU184526 other downstream 95054 20797458 ~ 20803180 (+) False AMCG00005280
TU184679 other downstream 635028 21337432 ~ 21340712 (+) True G146790
TU184762 other downstream 868126 21570530 ~ 21572321 (+) True AMCG00005329
TU184830 other downstream 978304 21680708 ~ 21704394 (+) True AMCG00005340
TU184875 other downstream 1109328 21811732 ~ 21848136 (+) True G146952

Expression Profile