RNA id: AMCG00005287



Basic Information


Item Value
RNA id AMCG00005287
length 588
RNA type mRNA
GC content 0.61
exon number 3
gene id AMCG00005287
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20741178 ~ 20742301 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCCGCTCTGGGGGCCATCATGCCCACCGACCGGGAGCCCACCATGACCGCCAAACTCCTGCACCTCGTCTTCCTCTCCACCTTCTGGGGCATGCAGATCTGGGTCACCTTCATCTCAGGCTTCGTGATGGACAACAACCTGAACAGACACACCTTCGGCTACATCCAGAGCCGTCTCTTCCCTTTCTACTTCCACATGGGATCCGCCTGCGCCTTCTTCAACCTCACCATCTTCACCATGTACCACCCCAGCGACCTGCTGGACGACAGGGAGGCCTTCCAGGTCTTCATCTTCTTCGTGTGTGTGACGGTGGCGGCGGTCAACGCGCAGTGGTTCGGCCAGATGACGTCGGAGATCATGGCGGACATGCACCAGATCGAGCAGGCGTGCGGCCTGGGCCAGGACATCGGGCTCTCGTCCAACCGCGAGGCCTACAGCAAGCTGCGTGAGTCCGACGCCCGGTACCGGAAGCTGAGCAGCCGCCTGTGGCTCTACCACTCGCTGTCCTCGCTGTGCAACCTGTGCTGCATCGGCTGCAACGGGCTGAGCCTCTACTACCTGGCCGAGAACATGACCACCCTATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU184443 lncRNA upstream 2857 20682625 ~ 20738321 (+) False G146599
TU184428 lncRNA upstream 28958 20642772 ~ 20712220 (+) False G146591
TU184442 lncRNA upstream 57194 20682625 ~ 20683984 (+) True G146599
TU184435 lncRNA upstream 71009 20666083 ~ 20670169 (+) False G146596
TU184426 lncRNA upstream 79578 20642772 ~ 20661600 (+) True G146591
TU184498 lncRNA downstream 8003 20750304 ~ 20750938 (+) True G146640
TU184567 lncRNA downstream 113410 20855711 ~ 20855918 (+) True G146701
TU184569 lncRNA downstream 124905 20867206 ~ 20867406 (+) True G146703
TU184620 lncRNA downstream 321672 21063973 ~ 21064908 (+) True G146749
TU184664 lncRNA downstream 584231 21326532 ~ 21328902 (+) True G146782
AMCG00005286 mRNA upstream 38706 20699757 ~ 20702472 (+) False AMCG00005286
AMCG00005279 mRNA upstream 113247 20597743 ~ 20627931 (+) True AMCG00005279
AMCG00005278 mRNA upstream 145424 20589746 ~ 20595754 (+) True AMCG00005278
AMCG00005274 mRNA upstream 251514 20484932 ~ 20489664 (+) True AMCG00005274
AMCG00005272 mRNA upstream 461601 20253009 ~ 20279577 (+) True AMCG00005272
AMCG00005288 mRNA downstream 21331 20763632 ~ 20768980 (+) True AMCG00005288
AMCG00005282 mRNA downstream 39007 20781308 ~ 20794020 (+) True AMCG00005282
AMCG00005280 mRNA downstream 55267 20797568 ~ 20803197 (+) True AMCG00005280
AMCG00005281 mRNA downstream 61320 20803621 ~ 20806381 (+) True AMCG00005281
AMCG00005283 mRNA downstream 64900 20807201 ~ 20814750 (+) True AMCG00005283
TU184446 other upstream 38774 20699486 ~ 20702404 (+) True AMCG00005286
TU184436 other upstream 71009 20661926 ~ 20670169 (+) True G146596
TU184405 other upstream 216359 20521649 ~ 20524819 (+) True G146575
TU184347 other upstream 461392 20273513 ~ 20279786 (+) False AMCG00005272
TU184341 other upstream 556535 20182354 ~ 20184643 (+) True G146519
TU184526 other downstream 55157 20797458 ~ 20803180 (+) False AMCG00005280
TU184679 other downstream 595131 21337432 ~ 21340712 (+) True G146790
TU184762 other downstream 828229 21570530 ~ 21572321 (+) True AMCG00005329
TU184830 other downstream 938407 21680708 ~ 21704394 (+) True AMCG00005340
TU184875 other downstream 1069431 21811732 ~ 21848136 (+) True G146952

Expression Profile