RNA id: AMCG00005290


Basic Information

Item Value
RNA id AMCG00005290
length 1761
RNA type mRNA
GC content 0.65
exon number 5
gene id AMCG00005290
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20757391 ~ 20760830 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggaGGAGAGCGGCGCAGCGGAGGAGGACATTGACGCGTTGATCGATGGCATGGAATACATCCCAGGACACTTCCACCTGCCGCTGCACCTGAACTGCGAGCCACGGGGGCCGGCTGAGCTGCGGCGCAGGGACACCCGTCTGAAGCGGCACAGCCTGCAGGCCGAGCTGGAGGCCGAGCCCGGGGCGCAGCAGTATGCGGTGCGGAACCTGCTGGGCCTCCTTGCCTTCCACTTGGACGAGCTGGACCGGGCCGAGGAGACCTTTCGCAGCGTCTGCGAGGAGCAGCCGGGCAACCTGAATGCCTGGGCCAACCTGGGCTGCGTGTACGACCGGCtgaagagggagggggagggggccgAATGCGTGGAGAAGGTGTCCGCTCTCATGGGCCTGGGGCCGGGGGACTCGGGCCAGGGAAACCCCAGGCTGCTGGCGGCCCGCTGCCTGGCCGAGCAGGCCTACGCCCACCCCTACGACGTGGAGCTGGACGGCGAGGACGAGCACCGCGAGAGGCTGATGTCCGCCATCGCACTCTACGACAAGGCCTTCGAGTATGGCGGCCAGGAGATCCCTCTGGAAGAGAAGAGAAGCTGGTACTTTAAGATGGCAACACTGTATATAAGGCTGTGTGAATGTCTTCAGGTCTGTGCTTGTCCTCTCTGTGTGGCAGCTCTGGCCTGGTGCTACCTGGGCCTCCTGCTGGAGAGACAGGAGGAATTCCCTGACGTTCCCATGGCTATCCACGACTGTGGCTATTCCGGCACAGACCCCCTGTCCTGCTATGGCACGGCCATAAAGATGGCCAAGGAAGACGCCTTCATCCTGAACCGGCTGGCCAAGGTCTTCCTCCTTCTGGGCAAGGACGAGATGGCCACAGGCATCTGCAGCATGGCCCTGGACGTCCTACCCGACCCTGAGCTGAACTGGCAGGCCTACTGCACCCGCGCCAAGGTGGGAACCCCGCCCTGCCAGGGACACACACGGGGGGAGGACTGGGTATTAAGCAAATCTGGTCATGTGACATATCTGGGTCCTATTGTCCTCCTCTGCCCTGTACAGATCAAAGTGACGACCTATGTCCGGGGCCTGGAGTGTGCCAAGCAGGGCGTGGCTGGGGTGCCTGACAGGCAGAACCTGGCAGAGGCCAAAGCGGACCTGGACAAGGTGCTGAGCGTGTGCCCCTGCCTGCGGACACACCTGGAGATGGGCCAGGTGTACTACTACATGGGCGTGGACGCGATGCAGGAGCGGCTGCTGGTAGACGAGAGCGCCATCAACGCGTCACTGGTGAGCCTTGCGCGGGCGCTGGAGTGTGATCTGGGCGACTTGCTGCCCGAGCTGCAGCTGCTGCGGGGGAAGTGCCTGCTGCTGAAGGGGGAGGAGCTGAACGCTGTCGAGTGCTTCAAGCGGGCCCTGGAGCTGGAGGCGCCGGGCAGCACCGACACACAGAGCCTGCGCTGCCTCCTGGAAACGCTGCTGGCCCTCTTCTCCCAGAGCTGCCCAGGGTCTGGCTCTGGTGTGGGCAACGCCATGTCCCAGCTGGAGACCTGGGTGCGCCGGGGGATGGAGCACTTCCCCCCTGAGCTGGTGCGGGCTGAGCTGCAGTCACTGTGCCGCGCTCACACCGCCGAGGTGTCTGAGCTGTCCCGTGCCGCCGTGCGCGCCGGCCGGATGGACCTGGTCCGGCTACTGTTGGATACCGTGCAGCCCGGCCGTGAGGGCAGGAGGAGGCCGCTGGTCAGGTCGATGACCATGTAG

Function

GO: NA

KEGG:

id description
K24933 TTC22; tetratricopeptide repeat protein 22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184511 lncRNA downstream 70 20756956 ~ 20757321 (-) True G146652
TU184485 lncRNA downstream 49785 20694815 ~ 20707606 (-) True G146631
TU184476 lncRNA downstream 121182 20634124 ~ 20636209 (-) True G146623
TU184453 lncRNA downstream 156877 20600174 ~ 20600514 (-) True G146609
TU184451 lncRNA downstream 157888 20599239 ~ 20599503 (-) True G146607
TU184568 lncRNA upstream 96770 20857600 ~ 20857802 (-) True G146702
TU184704 lncRNA upstream 620476 21381306 ~ 21381569 (-) True G146813
TU184738 lncRNA upstream 725119 21485949 ~ 21487711 (-) True AMCG00005333
TU184761 lncRNA upstream 799219 21560049 ~ 21561461 (-) True G146857
TU184798 lncRNA upstream 829166 21589996 ~ 21606535 (-) True G146891
AMCG00005292 mRNA downstream 1897 20752234 ~ 20755494 (-) True AMCG00005292
AMCG00005296 mRNA downstream 5492 20746440 ~ 20751899 (-) True AMCG00005296
AMCG00005291 mRNA downstream 22309 20723878 ~ 20735082 (-) True AMCG00005291
AMCG00005293 mRNA downstream 47422 20708786 ~ 20709969 (-) True AMCG00005293
AMCG00005295 mRNA downstream 79444 20647556 ~ 20677947 (-) True AMCG00005295
AMCG00005289 mRNA upstream 8206 20769036 ~ 20780518 (-) True AMCG00005289
AMCG00005285 mRNA upstream 54013 20814843 ~ 20849602 (-) True AMCG00005285
AMCG00005305 mRNA upstream 222036 20982866 ~ 20999934 (-) True AMCG00005305
AMCG00005304 mRNA upstream 273962 21034792 ~ 21049355 (-) True AMCG00005304
AMCG00005297 mRNA upstream 298479 21059309 ~ 21067609 (-) True AMCG00005297
TU184470 other downstream 146748 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 477645 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 733884 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 733884 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 995945 19758232 ~ 19761446 (-) True AMCG00005240
TU184860 other upstream 984046 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 1210205 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 1269995 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 1275765 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 1322887 22083717 ~ 22084944 (-) True G147108

Expression Profile