RNA id: AMCG00005291


Basic Information

Item Value
RNA id AMCG00005291
length 873
RNA type mRNA
GC content 0.49
exon number 8
gene id AMCG00005291
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20723878 ~ 20735082 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCAACTCCACCCCTCCACCCTCACCCCTCAAACAAGAGTTCGATCAGGAATGGAGGCAGGTTTCCTGGGGAAGAGAggagaaagagaggctGATGGAGAAAATCAGGAATTTAAAGCCACCAGGTGATGAATCACCAGAATTCAGGATCCTGATACACGGGCAAATCAGTGCTGGGAAGTCCAGTTTCCTCAACACAGTTGGTTCCATCTTCGAGGAACGTTTGGTATCCCGGGCAGGAGTTGGTGTGGGCAGTACAAGTATTACCAAGAAGTTTACTCCCTACCATTTAAGAGATAAAAAAACAGGATCATATTTGCCCTTCGCTCTGTGTGACGTCATGGGCATGGAGACCGGAGATGGGCAGGGGATGCATCCCGATGACATCATCAGTGCAGCAAAAGGACACATGAAAGACGGATATGAGtTTAATCCTGCATCACCCCTGAAACCTGACACCAGTGAGAGACCACCTATGAGAGATCAGGCTTACTGCATCGTCTACATTGTGGCAGCGGATCAATTAAACCTCCTGTCAGATCATATTCAGGGGAAAATGAAGAAAGTCTGCAGCGAGCTCAATGTTATGGGTCTCCCTCAGGTGGTGCTGTTGACTAAGGTAGACAAAGCCAACAGACTGGTCAAGGAGAATCTCCGCAAAGTGTACACCAGCATTTACATGAAAGAGCAGATTGAGAAGTGCAGTCAGACACTTGGCATCCCAGTCACTCACATCCTCCCAGTGAAGAACTACCATGAGGAAACCAGCCTGAATGATGATCTTGATGTCCTCACCCTCTCTGCCCTGCTGCAGATACTTCACTTCACCAGCGACCGCTTTGAGAATCTGAACCGCAACTCCAGCCAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184485 lncRNA downstream 16272 20694815 ~ 20707606 (-) True G146631
TU184476 lncRNA downstream 87669 20634124 ~ 20636209 (-) True G146623
TU184453 lncRNA downstream 123364 20600174 ~ 20600514 (-) True G146609
TU184451 lncRNA downstream 124375 20599239 ~ 20599503 (-) True G146607
TU184408 lncRNA downstream 188678 20534368 ~ 20535200 (-) True G146578
TU184511 lncRNA upstream 21874 20756956 ~ 20757321 (-) True G146652
TU184568 lncRNA upstream 122518 20857600 ~ 20857802 (-) True G146702
TU184704 lncRNA upstream 646224 21381306 ~ 21381569 (-) True G146813
TU184738 lncRNA upstream 750867 21485949 ~ 21487711 (-) True AMCG00005333
TU184761 lncRNA upstream 824967 21560049 ~ 21561461 (-) True G146857
AMCG00005293 mRNA downstream 13909 20708786 ~ 20709969 (-) True AMCG00005293
AMCG00005295 mRNA downstream 45931 20647556 ~ 20677947 (-) True AMCG00005295
AMCG00005294 mRNA downstream 80654 20639658 ~ 20643224 (-) True AMCG00005294
AMCG00005275 mRNA downstream 176511 20542102 ~ 20547367 (-) True AMCG00005275
AMCG00005277 mRNA downstream 198577 20524046 ~ 20525301 (-) True AMCG00005277
AMCG00005296 mRNA upstream 11358 20746440 ~ 20751899 (-) True AMCG00005296
AMCG00005292 mRNA upstream 17152 20752234 ~ 20755494 (-) True AMCG00005292
AMCG00005290 mRNA upstream 22309 20757391 ~ 20760830 (-) True AMCG00005290
AMCG00005289 mRNA upstream 33954 20769036 ~ 20780518 (-) True AMCG00005289
AMCG00005285 mRNA upstream 79761 20814843 ~ 20849602 (-) True AMCG00005285
TU184470 other downstream 113235 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 444132 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 700371 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 700371 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 962432 19758232 ~ 19761446 (-) True AMCG00005240
TU184860 other upstream 1009794 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 1235953 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 1295743 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 1301513 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 1348635 22083717 ~ 22084944 (-) True G147108

Expression Profile