RNA id: AMCG00005292


Basic Information

Item Value
RNA id AMCG00005292
length 2385
RNA type mRNA
GC content 0.59
exon number 3
gene id AMCG00005292
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20752234 ~ 20755494 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAAACGCGTTTAGCAACTGTGATTCAGCGGTAGTTTGTCCCTTTGCGTTCTCCGTACAAATGCAGTTcgcagtgtggagtagcagtCGGTGACTTTATGACAATGAAAGTGCTTTAtctgtaatgttatttaatctATAACAGCACCATCTGTCTTCCCATTCACACTGCATGCGGCTCTGATGACGTTTGGTTTAGAGTGaGTGTGTGCCATGGCGTCTCTGCTGCGCCGCTGTCCCAGGGAGCTGCTGTCCCGTGCTCCGCATCCCCCGCTCCGCACACAGCACCCACACCTCTGCACCGCCCTACCCCCCAGCACCGCTGCGAGGAGTGAACCCAGAACCGAGCCCGGCAATGCGGGGTGCTCTCCCGGGCCGCAGCTGGTGTCGCGCCTCTTCCGGCCGTCTAACCTGCGGGAGGAGAAGGACTTGGCACCGGGTGGCCGGCCGGGGGAGGCGATGACCTGCAAGAGCCAGCGGCTGATGCTGCAGGCCGGCCTCATCCACCCAGCCAACCCCGGCTGCTACCACTACCTGCCGGTCACGGTGCGTGCCGTGGAGAAGCTGGTGCGGCTCATCGACCAGGAGATGCAGGGCATTGGCGGGCAGAAGCTGGACATGCCTAGCCTGTGCGCGGCCGACCTGTGGCGCCGCAGTGAGCGCTGGGACCTCATGGGCAAGGAGCTGTTCCGGCTGCGGGACCGGCACGGCGCCGAGTACTGCCTGGGGCCCACGCACGAGGAGGCCGTCACCGAGCTGCTGGCCGCGCAGGGCACCCTCTCCTACCGGCAGCTCCCTCTGCTGCTCTACCAGGTGACCCGGAAGTTCCGTGACGAGCCGAAGCCGCGGTTCGGGCTGCTGCGCGGGCGTGAATTCTACATGAAGGACATGTACTCCTTTGACGTGAACGAGGAGGCGGCGCGGCGTACCTACGAGTCCGTGTGCCAGGCCTATGCGCGGCTCTTCACCCGCCTGGGGCTGCGCTGGGTGCAGGTGCAGGCCGACACGGGCAACATCGGGGGCGAGCTTTCGCACGAGTTCCAGCTGCCCGCGGACGTGGGCGAGGACCGGCTGCTGGTGTGCGGCGACTGTGGGTTCTCGGCCAACGCAGAGACCCTGGAGCAGGAGCGGTGTCCGCAGTGCAAGGGCGGCATGCTGGCGGAGACCAAGGGCATCGAGGTGGGCCACACCTTCTACCTGGGCACCAAGTACTCCTCTATCTTCAGCGCCTCCTACAACAACCCCCAGAACAAGCCCGTGATCTGCGAGATGGGCTGCTACGGCCTGGGCGTCACACGCATCCTGGCCGCCTCCATCGAGGTGCTGTCCCCCGAGGACCGGATCCGCTGGCCAGGGCTGCTGGCGCCCTACCAGGTCTGCGTCCTGCCGCCCAAGAAGGGTGGCCGCGGGGAGGAGGCGGCGGGGCTGGCGTGGGGGCTGTGCGGGGCGCTGGCCGAGGCGCTGCCCGCCCTGCGTGGCGAGGTGGCGCTGGATGACCGGACACAGCTGACCATCGGCAAGCGGCTGAAGGACGCGGACATCATGGGCTACCCGTATGTCATCGTGGTGGGGCAGAGCGCGCTGGATGACCTGCCCACCTTTGAGGTGCGCACACAGACCACGGGGGAGACTGTGTTCCTCACCTGGGAGGGCGTCGTCGACTTCCTGCGGGGGGTGGAGACGGTCTGAGTGCGGAGAGACGCACTGTGAACGCCGCGGATTGTCTGATTGTGTCCCTGGGTGACAATAAAGGCATTGTGTGACGggattctgtgtgtgttgcGTTCATTGTGGCGTGGCGTGTCTGTGTCTTCTTTATGATGTCATGCGACACTGAACACCTTTTCACTGtttgaaacaaatacacagacagaAGCCCCCAGTGtctcctggtgtgtgtgtgcggggtaTTGATCAATAGTATCTTAACTCAATAGCTTTGGTTGTAAGGTGCCTGTTTGTCTTCcctttttctgcttttgtatatattgtggtGGGATTTCATTCtgtaataaagatttgaaaatcACCCTGAATGCCTTAATAATAACAGAACAGTGAATATAATGTTTAGCAGAAAGGTGTTTCAGCaacctaattaaaatgttctttatcaacatttcttaaatattttatctgAAAGCAGAGATAAAGTACAGTTGCCCTGGACTATACAGCAGTGAGGCTCTGTACAGACGCATCTCCACCGCCTCTTTGTGTTCGTATTACAGGTGTTGGGTCTGCTGTGTAGCCAGTGGAGTTTAAAGTGGGGCGGGAAGATCAATGGAAATATGTGATTTACACATGTCAGTTCATGGGTTCAGTTCTATTGTGCCAGCCTGTCTTATAACAGAACCGAAAGGACTCCCTGTATTATCAATGAAG

Function

GO:

id name namespace
GO:0006433 prolyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004827 proline-tRNA ligase activity molecular_function

KEGG:

id description
K01881 PARS, proS; prolyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184485 lncRNA downstream 44628 20694815 ~ 20707606 (-) True G146631
TU184476 lncRNA downstream 116025 20634124 ~ 20636209 (-) True G146623
TU184453 lncRNA downstream 151720 20600174 ~ 20600514 (-) True G146609
TU184451 lncRNA downstream 152731 20599239 ~ 20599503 (-) True G146607
TU184408 lncRNA downstream 217034 20534368 ~ 20535200 (-) True G146578
TU184511 lncRNA upstream 1462 20756956 ~ 20757321 (-) True G146652
TU184568 lncRNA upstream 102106 20857600 ~ 20857802 (-) True G146702
TU184704 lncRNA upstream 625812 21381306 ~ 21381569 (-) True G146813
TU184738 lncRNA upstream 730455 21485949 ~ 21487711 (-) True AMCG00005333
TU184761 lncRNA upstream 804555 21560049 ~ 21561461 (-) True G146857
AMCG00005296 mRNA downstream 335 20746440 ~ 20751899 (-) True AMCG00005296
AMCG00005291 mRNA downstream 17152 20723878 ~ 20735082 (-) True AMCG00005291
AMCG00005293 mRNA downstream 42265 20708786 ~ 20709969 (-) True AMCG00005293
AMCG00005295 mRNA downstream 74287 20647556 ~ 20677947 (-) True AMCG00005295
AMCG00005294 mRNA downstream 109010 20639658 ~ 20643224 (-) True AMCG00005294
AMCG00005290 mRNA upstream 1897 20757391 ~ 20760830 (-) True AMCG00005290
AMCG00005289 mRNA upstream 13542 20769036 ~ 20780518 (-) True AMCG00005289
AMCG00005285 mRNA upstream 59349 20814843 ~ 20849602 (-) True AMCG00005285
AMCG00005305 mRNA upstream 227372 20982866 ~ 20999934 (-) True AMCG00005305
AMCG00005304 mRNA upstream 279298 21034792 ~ 21049355 (-) True AMCG00005304
TU184470 other downstream 141591 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 472488 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 728727 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 728727 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 990788 19758232 ~ 19761446 (-) True AMCG00005240
TU184860 other upstream 989382 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 1215541 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 1275331 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 1281101 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 1328223 22083717 ~ 22084944 (-) True G147108

Expression Profile