RNA id: AMCG00005293


Basic Information

Item Value
RNA id AMCG00005293
length 357
RNA type mRNA
GC content 0.48
exon number 2
gene id AMCG00005293
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20708786 ~ 20709969 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGGAAATCAGGAATTTAAAGCCACCAGGGGAGGAATGGTCAGAATTCAGGATCCTGATGCTCGGGCAGATCAGCTCTGGGAAGTCCAGTTTCCTCAACACAGTTGGATCCATCTTCCAGGATCGTTTGGTATCCCGGGCAATAGTTGGTGTGGGCAGTACGAGTGTTACCAAGAAGTTTACTCCCTACCATTTGAGAGATAAAAAAACAGGATCGTATCTGCCTTTCGCTCTGTGTGACGTAATGGGCAAGGAGACCAGAGACGGGCAGGGGACACTTCCTGAGGACATCATCAGTGCAGCTAAAGGACACATGAAAGACGGATACGAGGTAAATCCAGCTGACATACTATAA

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184485 lncRNA downstream 1180 20694815 ~ 20707606 (-) True G146631
TU184476 lncRNA downstream 72577 20634124 ~ 20636209 (-) True G146623
TU184453 lncRNA downstream 108272 20600174 ~ 20600514 (-) True G146609
TU184451 lncRNA downstream 109283 20599239 ~ 20599503 (-) True G146607
TU184408 lncRNA downstream 173586 20534368 ~ 20535200 (-) True G146578
TU184511 lncRNA upstream 46987 20756956 ~ 20757321 (-) True G146652
TU184568 lncRNA upstream 147631 20857600 ~ 20857802 (-) True G146702
TU184704 lncRNA upstream 671337 21381306 ~ 21381569 (-) True G146813
TU184738 lncRNA upstream 775980 21485949 ~ 21487711 (-) True AMCG00005333
TU184761 lncRNA upstream 850080 21560049 ~ 21561461 (-) True G146857
AMCG00005295 mRNA downstream 30839 20647556 ~ 20677947 (-) True AMCG00005295
AMCG00005294 mRNA downstream 65562 20639658 ~ 20643224 (-) True AMCG00005294
AMCG00005275 mRNA downstream 161419 20542102 ~ 20547367 (-) True AMCG00005275
AMCG00005277 mRNA downstream 183485 20524046 ~ 20525301 (-) True AMCG00005277
AMCG00005276 mRNA downstream 206580 20491051 ~ 20502206 (-) True AMCG00005276
AMCG00005291 mRNA upstream 13909 20723878 ~ 20735082 (-) True AMCG00005291
AMCG00005296 mRNA upstream 36471 20746440 ~ 20751899 (-) True AMCG00005296
AMCG00005292 mRNA upstream 42265 20752234 ~ 20755494 (-) True AMCG00005292
AMCG00005290 mRNA upstream 47422 20757391 ~ 20760830 (-) True AMCG00005290
AMCG00005289 mRNA upstream 59067 20769036 ~ 20780518 (-) True AMCG00005289
TU184470 other downstream 98143 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 429040 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 685279 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 685279 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 947340 19758232 ~ 19761446 (-) True AMCG00005240
TU184860 other upstream 1034907 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 1261066 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 1320856 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 1326626 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 1373748 22083717 ~ 22084944 (-) True G147108

Expression Profile