RNA id: AMCG00005296


Basic Information

Item Value
RNA id AMCG00005296
length 1323
RNA type mRNA
GC content 0.64
exon number 10
gene id AMCG00005296
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 20746440 ~ 20751899 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTTTGCAGCCGCAGGGGGACGAGAGCGACGATGGGATGGACGAGTTCATGGACAAATTCACCAAACAGAAATACAAGGGCGCCTTCAGCGAGGACAGCTGGCAGGAgAAGGCTCCTGAAGAGATCGACCCCTTGAAGAACCCGGAGCTCGCCTGCCTGCAGTCCATCATCCACGACGAGGACCGGCCGCCGGAAGGTACTGCCACCCAGCCCACCCTTGTCGGTGTCCGTGTGCCGGGGGACATCCTGGTTTCCACCGAGACGACGCGGTCGGACCAGCGCAGGGCCTGTCCTTCGCAGTGTCGCAAAACCACAGCTCTCTACGGAGGGCTGGGCAGCGAGAGCTCAAGCAGACAGCAAGCCAGGAGCTTCAAGGACGAGGGCAACGAGTACTTCAAGGAGAAGAACTACAAGAAGGCGATCCTGTCTTACACGGAGGGGCTGCGGAGGAAGTGCGCCGACCAGGGCCTCAACGCCGTCCTCCTGACCAACCGAGCGGCCGCACACTTTCACCTGGGCAACATTCGCTCCAGCCTGAACGACGCGCTTGAGGCCAAGAAACTGAAGCCAGACCACCTGAAAGCAGTGCAGAGAGgagcGCAGTGCCTCGTGGAGCTGCGCAGGTACACCGAGGCCCTGCAGTGCTGTGACGAGGGGCTCAGGGTGGACCCCCAGGACAAGAAGCTACAGGAGCTGCGGGCGACAGCCGACCAGCTCAGGAGGGCTGTGGAGCGGGATGCCAGGAAGGCCCGagtgaaggagaagaaggagcgCGAGGAGAGAGAGGCCCTGCGCGCCGCCATCAGgGCccggaacatcaagctgctggAGCCGCCGCCGCTACCCCGCCGGCGCTCGgacgaggaggaagaggaggacgaggaggggAGGGCGCTGTCCGTGGGGCTGGCGGAGCTGGAACTGGACGGGCTCGGGGTGGAGAGCCCCACGGGGGCGCGCGTGTTCCTGGACGGGCAGGGCGTCCTGCTCTGGCCCGTGCTCTTCCTGTACCCCGAGCACCAGCAGACGGACTTCATCTCCGCTTTCAGCGAGGCAGACAGGTTTGTGGATCACCTGAGCGTGATGTTTGGGGATGAGCTTCCTTCCTGGGACACGGACAGGAAGTATCGCCCATGTGACCTGCAGGacgaggagaaggaggagctgTACGAGGTCAGCCCTGCCAGCAGCCTGCTGGAGGTGCTGCAGCACGACAGGTTCTTCGTGAAGGCCGGCACTCCGGGGATCATAGTCCTGGTCCGGGGATCGGCCTTCTGCTCGCACTTCCTGTCGGGGAGACGAGTGCACCGGCTCAAGTGA

Function

GO: NA

KEGG:

id description
K24927 TTC4, CNS1; tetratricopeptide repeat protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184485 lncRNA downstream 38834 20694815 ~ 20707606 (-) True G146631
TU184476 lncRNA downstream 110231 20634124 ~ 20636209 (-) True G146623
TU184453 lncRNA downstream 145926 20600174 ~ 20600514 (-) True G146609
TU184451 lncRNA downstream 146937 20599239 ~ 20599503 (-) True G146607
TU184408 lncRNA downstream 211240 20534368 ~ 20535200 (-) True G146578
TU184511 lncRNA upstream 5057 20756956 ~ 20757321 (-) True G146652
TU184568 lncRNA upstream 105701 20857600 ~ 20857802 (-) True G146702
TU184704 lncRNA upstream 629407 21381306 ~ 21381569 (-) True G146813
TU184738 lncRNA upstream 734050 21485949 ~ 21487711 (-) True AMCG00005333
TU184761 lncRNA upstream 808150 21560049 ~ 21561461 (-) True G146857
AMCG00005291 mRNA downstream 11358 20723878 ~ 20735082 (-) True AMCG00005291
AMCG00005293 mRNA downstream 36471 20708786 ~ 20709969 (-) True AMCG00005293
AMCG00005295 mRNA downstream 68493 20647556 ~ 20677947 (-) True AMCG00005295
AMCG00005294 mRNA downstream 103216 20639658 ~ 20643224 (-) True AMCG00005294
AMCG00005275 mRNA downstream 199073 20542102 ~ 20547367 (-) True AMCG00005275
AMCG00005292 mRNA upstream 335 20752234 ~ 20755494 (-) True AMCG00005292
AMCG00005290 mRNA upstream 5492 20757391 ~ 20760830 (-) True AMCG00005290
AMCG00005289 mRNA upstream 17137 20769036 ~ 20780518 (-) True AMCG00005289
AMCG00005285 mRNA upstream 62944 20814843 ~ 20849602 (-) True AMCG00005285
AMCG00005305 mRNA upstream 230967 20982866 ~ 20999934 (-) True AMCG00005305
TU184470 other downstream 135797 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 466694 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 722933 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 722933 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 984994 19758232 ~ 19761446 (-) True AMCG00005240
TU184860 other upstream 992977 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 1219136 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 1278926 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 1284696 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 1331818 22083717 ~ 22084944 (-) True G147108

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) LOC110520997 True 1909 mRNA 0.45 11 NC_050570.1 37549840 ~ 37559235 (-)