RNA id: AMCG00005301


Basic Information

Item Value
RNA id AMCG00005301
length 315
RNA type mRNA
GC content 0.51
exon number 2
gene id AMCG00005301
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21098565 ~ 21099069 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggagagagacggagagagagagGTTTCAGAAATAACTTTCCAACCGACCGTTAGCCCTCCTTTCCCACAAAAGAAGCATTGCATTCTGGGAGTTGCTGACAGTGATTCCCATTCTGGCCCACAGGTCCTCCAGCACCACCACGCTGTCCACGAGATTTCCTACATTGCCAAGGACATCACGGACCACCGCGCCTTCGGATATGTCTGTGGGAAGGAGGGCAACCATAGATTTGTGGCCATCAAGACAGCGCAGTCTGTGAGTACCGTCCAGCTCCTCccagcattattattttgtacattgaCATTAGCGTGA

Function

GO: NA

KEGG:

id description
ko04340 Hedgehog signaling pathway
ko04341 Hedgehog signaling pathway - fly

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184568 lncRNA downstream 240763 20857600 ~ 20857802 (-) True G146702
TU184511 lncRNA downstream 341244 20756956 ~ 20757321 (-) True G146652
TU184485 lncRNA downstream 390959 20694815 ~ 20707606 (-) True G146631
TU184476 lncRNA downstream 462356 20634124 ~ 20636209 (-) True G146623
TU184453 lncRNA downstream 498051 20600174 ~ 20600514 (-) True G146609
TU184704 lncRNA upstream 282237 21381306 ~ 21381569 (-) True G146813
TU184738 lncRNA upstream 386880 21485949 ~ 21487711 (-) True AMCG00005333
TU184761 lncRNA upstream 460980 21560049 ~ 21561461 (-) True G146857
TU184798 lncRNA upstream 490927 21589996 ~ 21606535 (-) True G146891
TU184859 lncRNA upstream 646475 21745544 ~ 21745808 (-) False AMCG00005343
AMCG00005300 mRNA downstream 3421 21086585 ~ 21095144 (-) True AMCG00005300
AMCG00005299 mRNA downstream 13247 21069272 ~ 21085318 (-) True AMCG00005299
AMCG00005297 mRNA downstream 30956 21059309 ~ 21067609 (-) True AMCG00005297
AMCG00005304 mRNA downstream 49210 21034792 ~ 21049355 (-) True AMCG00005304
AMCG00005305 mRNA downstream 98631 20982866 ~ 20999934 (-) True AMCG00005305
AMCG00005298 mRNA upstream 12666 21111735 ~ 21114855 (-) True AMCG00005298
AMCG00005308 mRNA upstream 210996 21310065 ~ 21316985 (-) True AMCG00005308
AMCG00005307 mRNA upstream 218550 21317619 ~ 21326095 (-) True AMCG00005307
AMCG00005309 mRNA upstream 228288 21327357 ~ 21329990 (-) True AMCG00005309
AMCG00005306 mRNA upstream 232179 21331248 ~ 21333536 (-) True AMCG00005306
TU184470 other downstream 487922 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 818819 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1075058 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 1075058 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 1337119 19758232 ~ 19761446 (-) True AMCG00005240
TU184860 other upstream 645807 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 871966 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 931756 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 937526 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 984648 22083717 ~ 22084944 (-) True G147108

Expression Profile