RNA id: AMCG00005306


Basic Information

Item Value
RNA id AMCG00005306
length 2289
RNA type mRNA
GC content 0.61
exon number 1
gene id AMCG00005306
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21331248 ~ 21333536 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGTCCACCAGCCTGTTCAACAATCCCTACGCCATTGAAGTCCTTCAGACCAAAAAGAAGGACTTGGTGGAAGGCATTTCCAACACAGAACACCTGCTGAACCTCCTCATCGACAAGGGCATCTTGCCGCCAGAGAAGAAGGTCATCATGGCAAACTACCGGTCTCGGGAGGAGAAGAACTCCCGCGTCCTGGACATCCTGGTCTCCCAAGGCGAGCGGGCTTGCCGCCTGTTCTTCTACCCCTGCCTGAAGCTCGCAGAGCCTGACTTGTACGAAAGCATCAAAGAGTACGTGGGGGATGTGAACGAGAACATCAGAGATGCCCGGAGGCAGCTGATAGGGTACCTTCTGGAGAGGGATCACGGGGGTCCCGTCAAAATAAAGCAGAATCAAACCCCAAAAGCCCTTAAAGCCCCCGAGAAGCCCAAGCGTGCGGTGGTTCCACAAAAGAGGGAAAAGCTCCGATTCAGTGAGCCGGAGAAGACCGTCCCATTGGTGAAGAGAACAGAGGAGCCTAAAGCAGTGCCTCCAAAGCCAGGGGGGGTTTTCGACGCCGCTGCGGCGGGAGACCTCTCCCTCCTGGAGGAGCTTCTTAAGGGCTGCGACGTCAACGCGGTCGACTCCTCCAAGGAGACGCTGTTGCACATGGCCGCGGCACATGGCCGGGTCCCCGTCATCGAGTTCCTGCTCAGCAAAGGGGCCAAGCTGGACGTGAGGGACAGCAAGGGCAGGACCCCGCTGCACAGAGCCGCGGAGAAAGGTCACGTTCAGGCTGTGAAGTTCCTTGTGCAGGCGGGGGCGGACATCTACACCCTGGACAGTGACTCCAAGACTCCAGCTCACTTGGCAGCCCAGAACAAGCACCTCAGCACGGTCAGGGCCCTGGTGGAGGAAGAGACCCGGAGCTTCCGAAATCACAGGGCGTTTTTGCACATGGCGGCCCTCAAGGATGATTCCAGTCTGGCCCAGGTCCTCCTCCAGAGTGGAGCTCCTGTGGACGCAAAGGACAACAAGCAGAGGACCGCACTCTTTCACGCAGTGAATAATGGATTCGAGAGGACGGCCAGGGTCCTTCTGGAAGCCGGAGCCCAGGTAGACTCCGGCATCATCGACGCCGCGTTCAATCACAACAGCCAGTCCATGTACGGCCTCCTCCTGCAGTACAGCAAGGGTTTGTCTCCCGACACCATGCTGTCCGCGCTTTTCAAAGCCGTGCAGAGGAATTTGCAGGGGATCGTGGCGGCGCTGATAGACCGGGGCACCGACATCAACGGGCGCAACGAGATGCAGTACACGCCTGTACTCCTGGCGGTAGAGCTGGGCCACCTCGAAACGGCCAAGGTCCTGGTTGCCAAAAAGGCCCGTCTGGAGGAGAGGTTGCCCAACCAGAACTCCGCGCTGCACCTGGCTGCTCAGAGTGGGAGTCTCGGGGTCACCCAGCTGCTGCTGGAGGCGGGCATGGATGCCAACGTGGCCGGTCCCGGGGACATGGCCCCCCTGCACGTGGCCGCCTTCCACAACAAGCCGGTGCTGGTAGAGGTGCTGGTGAGGGCTGGGGCCCAGGTCAACGCCCCAACCCGAGAGTCTCTCACCGCCCTGCACATTGCCAGTCAGTGCGGCCACGACGACGTCGTTTCCCAGCTGCTCAGGAGCAAGGCGGATGTCCATGCCAAAGACCGGCAGTCGTGGACAGCTCTGCACTACGCCGGTGCACGTGCAGGGGCCGCCACGGTACAGCAGCTACTGGAAAACAGCGCGGACCCCAACGTCGCAGACAAGGAGAAAAAGACACCCTTGCACCTGGCCGCCCTGGATGGAAACTCAGAGGCCGTGTCCGCCCTTCTGCTCGGCAAGGCCAGGGCTGGAGCCAAAGACATGGACGGCTGCACCCCTCTGCACTACGCTGCAGCCAAAGGTCACGTGAGGGTCGCCGAGGCTCTCCTGGCCTCCGGGAAAAACAATGACGACAAAAACGTGTGGCGGAAGACCCCCCTACACATGGCAGCCGAGCACGGGCAGGACGCCGTGGTGGACCTCCTGCTGCCCAGTGGCGCCAAGATCAACGCCCTGGACAACAACCGGGACACCCCTCTGCACTGCGCCTGTCGGGCCGGGCACCTGGGCACCGTGCGGAGCCTGCTGGGCTGGACGCAGGGGGAGAAGGCCAACCTGCAGGCGACCAACAGCGTGAAGAAGACCCCTCTGCAGGTGGCCGAGTCTGGGCAGGGGGAAGGCCACGGGCAGATCGTCACCCTGCTGAAGAAGAAGATGCTGCTGATCAAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184568 lncRNA downstream 473446 20857600 ~ 20857802 (-) True G146702
TU184511 lncRNA downstream 573927 20756956 ~ 20757321 (-) True G146652
TU184485 lncRNA downstream 623642 20694815 ~ 20707606 (-) True G146631
TU184476 lncRNA downstream 695039 20634124 ~ 20636209 (-) True G146623
TU184453 lncRNA downstream 730734 20600174 ~ 20600514 (-) True G146609
TU184704 lncRNA upstream 47770 21381306 ~ 21381569 (-) True G146813
TU184738 lncRNA upstream 152413 21485949 ~ 21487711 (-) True AMCG00005333
TU184761 lncRNA upstream 226513 21560049 ~ 21561461 (-) True G146857
TU184798 lncRNA upstream 256460 21589996 ~ 21606535 (-) True G146891
TU184859 lncRNA upstream 412008 21745544 ~ 21745808 (-) False AMCG00005343
AMCG00005309 mRNA downstream 1258 21327357 ~ 21329990 (-) True AMCG00005309
AMCG00005307 mRNA downstream 5153 21317619 ~ 21326095 (-) True AMCG00005307
AMCG00005308 mRNA downstream 14263 21310065 ~ 21316985 (-) True AMCG00005308
AMCG00005298 mRNA downstream 216393 21111735 ~ 21114855 (-) True AMCG00005298
AMCG00005301 mRNA downstream 232179 21098565 ~ 21099069 (-) True AMCG00005301
AMCG00005310 mRNA upstream 4709 21338245 ~ 21339228 (-) True AMCG00005310
AMCG00005312 mRNA upstream 123872 21457408 ~ 21462473 (-) True AMCG00005312
AMCG00005333 mRNA upstream 152610 21486146 ~ 21486358 (-) False AMCG00005333
AMCG00005331 mRNA upstream 170629 21504165 ~ 21521031 (-) True AMCG00005331
AMCG00005332 mRNA upstream 212899 21546435 ~ 21548854 (-) True AMCG00005332
TU184470 other downstream 720605 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1051502 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1307741 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 1307741 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 1569802 19758232 ~ 19761446 (-) True AMCG00005240
TU184860 other upstream 411340 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 637499 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 697289 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 703059 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 750181 22083717 ~ 22084944 (-) True G147108

Expression Profile