RNA id: AMCG00005307


Basic Information

Item Value
RNA id AMCG00005307
length 3389
RNA type mRNA
GC content 0.63
exon number 18
gene id AMCG00005307
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21317619 ~ 21326095 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTCACACTGGTGTTTGCCCTCCAGGCCGACGGGGGGCGCTGTGTCCGAGCACACGGGTGAGTCTGGCCTCCGGGCCGGCAGGGGGCGCTGCGGGATCCTCGGCCGTCTGACTGCAGGTCCTGTCGGCTGTGCCAGGCTGTGTGACGAGCAACATGGCGGAGGAGGTGGATGTTGTTGATATTGAGGGAGATGAGTCGGAGTTCAGTGTGAGGGATCAGGACGGTCCGGCACCGGGGTTCCTTCCGGACCAGTACCTGCAGTCGGCCTGGAAGAGCAACAGCGAGATCGTGCCCTGGACCCTGGACAGCTCCATCAGCGAGGAGAACCGGGCCGTGATCGAGAACATGCTGCTGGAGGAGCAGTATTATCTCACCGGGAAGGAGCTGCCCAAGAGCATCTGGCCTGGGGAGAAGCAGAGGCCGGACAAAGTGAAGAAGTCTCCAGTGAAAGCTGCTCACCAGCCGGCCCGGTGGGGGCAGGAGGAGAAGGACCTCTTCGAGAAAGGCCTGGCGCAGTTCGGCCGAAGGTGGACCAAGATAGCGAAGCTTATCGGCAGCCGGACGGTCCTGCAGGTGAAGAGCTACGCACGGCAGTACTTCAAAAACAAGGTGAGGAGGAAATGCAGAGCCCTTCTGGTCACCTGCACCACAGGGCCGCTCAGGAACGAGTGGAGTCGCCCCCTCGGTGTGTCTGAGTGGACAGCAGTGATCGCGCATCACTCTGAGCTCACCTGCTGCCTAATTCCTCTACAGGCCAAGACCGAGGGCATCCTGGTGGACCCCCCGGGAGCCCCTTTCCAGGGACCGTCCAACGGGGAGGTGCTGGGGGGCGGCGGCGGCACCTCCCGGCCAGTGTGGTCGGTGGAGAGCCCGGCCAGCAGCCTGTCCAACGCCGTCCGCATCCAGCGGCTGTCGGACGACGAGGACGTGGACATCACGGATGACACGGACGAGGACGCCGCGCCGCGGGGGGCTGAGGAGGGGCCCGGCAACGAGGACCCAGACGGCCCCCGGGAGGCAGAGACGAGCCCTGGCTCTTCCCCCTCGTGTCGGGACCCGAAGCCGACGCCCGCCTGCTCGTTGGACCAGCACGCCTCGCTCCCCACTCTGGGGGCCAGCGCCGGGCTCGGCCCGGTGAGTGAGCTGCTGGGCGGCTGTGGTCCGCTGCAATGCGAGGCGGGGGCCAACCAGGAGGCTGGAGACAAGGCCAACCCCCCGGAGCTATGGCCGGGGGGCCCGGAGGAGAGCGGACCGGGAGCGGGCCCCGGAGAGACGCTGCCTGAGAGTGAAGACCCCGAGGAAGCAGCTCCAGggctggaggaggaagaggaggaggaggaggaggaggatgaagaggaggagcTGAAAGCCCCCGAGCAGGAGGTGCAGCTGGACGTGGACGCCATCACGGAGGACGAGAAGCAGGCCATCCCCGAGTTCTTCGAGGGCCGTCCGTCCAAGACCCCCGAGCGCTACCTCAAGATCAGGAACTACATCTTGGACCAGTGGGTGAGATCCAAACCCAGGTACCTGAACAAGACCTCCGTGAGGCCGGGCCTGAAGAACTGCGGGGACGTGAACTGCATTGGCCGGATCCACACCTACCTGGAGCTGATCGGGGCGATCAACTTCAACTGTGGTAACGCCGGCCCCCGGGAGCCTCCGATTACTGCGGTGTTCACTTGCCCGACGAAGCACAAACCGCTGGTCTCTCTGTGTGTCGTTTCAGAGCAGGCGATCTACCACCGGCCCAGGATCGTGGACAAGTCTCGCCTGAAGGAGGGACGGGACGCCGTGGAGGCCTACCAGCTGGCGCAGAGGCTGCAGTCCATGCGCACACGGAAACGCCGAGTACGGGACACGTGGGGCAACTGGTGCGACGCCAAGGACCTGGAAGGACAGACGTTCGAGCACCTGAGCGCCGAGGAGCTGGCCAGGAGGAGGGAGGAGCACAGGAGACGGGTCCCCAGGCCCAGCAAGGTCCCCCGACAGGGCAAAGATTCGTTGGACCCCTTCCAGTTGATCCCTTGCAAGTCGTTCGGGGAGGACAAGCAGGAGCCGTTCCGAGTGGTGGTGTCCGCGGCAGCGATGGTGGTCATGGACATGCACGCGCACGTCTCCATGGCCGAGGTCATCGGACTGCTGGGAGGAGGATACGCCGAGGGGGACAAGGTCCTGAAGatctgcgccgCCGAGCCCTGCAACAGCCTGAGCACGGGCCTGCAGTGCGAGATGGACCCCGTGTCCCAGACGCAGGCCTCCGAGGCGCTGGCGGGCCGCGGCTACAGCGTGGTGGGCTGGTACCACTCCCACCCGGCCTTCGACCCCAACCCCTCCGTCCGGGACATCGACACGCAGGCTAAGTTCCAGAGTTACTTCTCTCGGGGGGGCGCCCAGTTCATCGGCATCATCGTCAGCCCCTACAACCCCTCCAACGCCGCGCCGCAGTCCCAGGTCACCTGCCTGGCCGTGAGTGAGGAGTCCAGCGCCGGCGGCCCACGCAGGCTGCCTTTCAAGTTCGAGATGCACCCGTCGCCGGAGGAGCCGGACTGGCCGCAGGTGCTGAGGAAGGCCCGGTGGGTCATCGACAAGTACCGGCTCTCACACGGGAGCGTGCCGATGGACCGACTCTTCCACAGAGACTCGGACCTCACCTGCTTAGAGAAGATGCTGGCGTCCATGAGGTCGTCCCTGGACTTCCTGCAGGAGGACGCGGTGACGGGCTTCCTGGCTCAGGTCGAGACCCTCTTCCTGTCCTGGTTCGTGGCCGAAAGCAGGAGCGGCTACACGGAGGGAGGAGACGCGGCGAGTCCTGGCGAGTGCCCGTCTGGCTCCGAGGAGATGTGACCCTCGTGCCGCTCTGGGAGCCCTGCGTCGTTTCATGAAGCTTCCCCGCAATCCAGCGTCTTCTGTTCGACCCGGGCTTCAGCTCTGTCCCGCAGTCCCCGTCATCAGTGTACATACGTACAAAACCATAAAGGTCTGGAGGTCTACTGCAGCCGTGGGACGCTGAAAAGGAACAATGTCCTCTGTCTGTTAGAACATGAACTTTAGAAACCCTCTCCTCCCGTCCACAAACTCAAACAAGCCAGCGGGGGCAAATGTGTCTTCAGGTCTCCAGCACTGGGATGTGGCCATGTGTGTAGAATTTGCgtatttaaagtgtttgtgttgttgtttcatgTCCCCAGTAAGACAGATCAAATATATCACCTCTGGAGGAGAAGCCGAGAGGCACTCGGGCTCGGCTGTGTGCGGCCGCTGGGTTTTACGAGAAAAGCCCCGTCCACAGTGAGGACGGCTCGAATGTAAACCGTGCTTCAGTATTACAAGGACCCCATATGTATCTGTTGTACATAAAGCAGAACAATAAAACGTTGATAACCAA

Function

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0035522 monoubiquitinated histone H2A deubiquitination biological_process
GO:0006508 proteolysis biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG:

id description
K11865 MYSM1; histone H2A deubiquitinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184568 lncRNA downstream 459817 20857600 ~ 20857802 (-) True G146702
TU184511 lncRNA downstream 560298 20756956 ~ 20757321 (-) True G146652
TU184485 lncRNA downstream 610013 20694815 ~ 20707606 (-) True G146631
TU184476 lncRNA downstream 681410 20634124 ~ 20636209 (-) True G146623
TU184453 lncRNA downstream 717105 20600174 ~ 20600514 (-) True G146609
TU184704 lncRNA upstream 55211 21381306 ~ 21381569 (-) True G146813
TU184738 lncRNA upstream 159854 21485949 ~ 21487711 (-) True AMCG00005333
TU184761 lncRNA upstream 233954 21560049 ~ 21561461 (-) True G146857
TU184798 lncRNA upstream 263901 21589996 ~ 21606535 (-) True G146891
TU184859 lncRNA upstream 419449 21745544 ~ 21745808 (-) False AMCG00005343
AMCG00005308 mRNA downstream 634 21310065 ~ 21316985 (-) True AMCG00005308
AMCG00005298 mRNA downstream 202764 21111735 ~ 21114855 (-) True AMCG00005298
AMCG00005301 mRNA downstream 218550 21098565 ~ 21099069 (-) True AMCG00005301
AMCG00005300 mRNA downstream 222475 21086585 ~ 21095144 (-) True AMCG00005300
AMCG00005299 mRNA downstream 232301 21069272 ~ 21085318 (-) True AMCG00005299
AMCG00005309 mRNA upstream 1262 21327357 ~ 21329990 (-) True AMCG00005309
AMCG00005306 mRNA upstream 5153 21331248 ~ 21333536 (-) True AMCG00005306
AMCG00005310 mRNA upstream 12150 21338245 ~ 21339228 (-) True AMCG00005310
AMCG00005312 mRNA upstream 131313 21457408 ~ 21462473 (-) True AMCG00005312
AMCG00005333 mRNA upstream 160051 21486146 ~ 21486358 (-) False AMCG00005333
TU184470 other downstream 706976 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1037873 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1294112 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 1294112 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 1556173 19758232 ~ 19761446 (-) True AMCG00005240
TU184860 other upstream 418781 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 644940 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 704730 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 710500 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 757622 22083717 ~ 22084944 (-) True G147108

Expression Profile