RNA id: AMCG00005311


Basic Information

Item Value
RNA id AMCG00005311
length 2463
RNA type mRNA
GC content 0.59
exon number 16
gene id AMCG00005311
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21403474 ~ 21457237 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGTGCGGTGGGGTGAGTAGCTCAGGGCAGAAGCTGGCATCCTCCCGGGAGCGTCATGGTCTACGGGACGAGACCCAGTGGCGCAATCGGAAATCAGCTGTGATGTCCGGTGCTGAGCAGTACTACGTGGGGGTGGACGTGGGGACGGCCAGCGTCCGGGCGGCTCTTGTCACAGGGGACGGGCTGGTGAAGACCAGAGCCGAGGAGTCCATCCACATCTGGCAGCCCCGCCCGGAGCACTATAAGGTCACAGAGGGTGTGGATAGAGCAAGGGTTCGAGGGATCGGCTTCGACGCCACCTGCTCTCTGGTGGTCCTGGACAAGAGCTTCCAGCCCCTCGCTGTGGATGTGGACGGACAGAAGGACAGGAACGTGATCATGTGGCTGGACCACAGGGCGTCCGAACAGGCGGTCCGCATCACTGGCACCGGACACGGGGTGCTACGTGCCGTGGGGGGGGTGATGTCCCCGGAGATGCAGCCCCCCAAACTGCTATGGCTCAAAGAAAACCTGCGGGGGTCCTGCTGGGAGGAAGCGGCCCACTTCTTCGACCTGCCGGACTTCCTGTCCTGGAAGGCCACCGGCTCCTTGGAGAGGTCTCTGTGCACCCTGATCTGTAAGTGGACCTACTCCCCTGAAACGGGCTGGGACCACAGCTTCTGGACCAGCATCGGCCTGGAAGATCTACTGGCCGACAACTACTCCAAAATAGGGGCGCACGCCTCCTGCCCGGGCTCCCCGCTGGGACAGGGGCTGACAGAGCAGGCAGCTCTAGAGATGGGTCTGAACACGGGAACAGCGGTCGCCGCCTCCCTCATCGACGCCCACGCTGGGGGACTAGGTGTGATCGGAGCAGACGTGAAGGGGAACGACCTGCCGTGTGAGAGACAGCCAATCACCTCGCGCTTGGCCTTGATCTGCGGCACGTCCTCCTGCCACATGGCGatcAGTGAGAGCCCCATCTTTGTGCCGGGGGTGTGGGGTCCCTATCACTCTGCCATGGTCCCGGGGTTCTGGCTGAACGAAGGGGGACAGAGTGCCACTGGGAAACTGATCGAACACGTGGTCACGGGACATGCCGCCTACCCCGAGCTCCGGGAGAAGGCCGAGGCCAGAGGGGAGAACGTCTACACCGCCCTCAACACGCGCCTGCGCGAGCTGAGCCAGGACGCGCCCCCCGACCTGCTCACCGCACACCTGCACGTCTGGCCAGACTTCCACGGCAACCGCTCTCCGCTGGCAGACCCCACTCTGCGGGGAACGGTAGTGGGTCTGTCGCTGTCCCACAGTCTGGACGACCTGGCTCTTCTCTATCTGGCCACCGTTCAGTCCATTGCGCTGGGCAGCCGACACATCCTGGACACAATGCGCGAGGCAGGACATGACATCAGCACGCTGTTCCTGTGCGGGGGACTGAGCAAGAACCCGGTGTTTGTGCGTGCGCACGCCGACATCACAGGTCTGCCGGTGGTGCTGCCCAGGGAGCCGGAGGCGGTGCTGGTGGGCGTGGCGGTGCTGGCCGCCTGTGCCTCCCGGGACTGCGGCTCCATTCAGCAATGGGGAAAATGGCCAAATTTCTACGACAAGAAGTACAAGGTGTTTCTGCGTCTTGTTGACCACCAGCGGGAGTACAGGGCTCTCATGCGTGACTGAGCAGGGCGGGGGGGCAGTGGGAGCGGCTGCAGTCCACACAGCGATGCCCGCTTTGAGCCCCCGGCCCGCTCCGGTTACACAACCACTACCGCACTGGAGTACATGAGGAATGACGCGGCTAGGCTccaggctggggggggggggagtgatttttgtctgtctttgatAGTGAAGTGGGATGGGACTGCAGATCACCTCTATATTACTAAAATACTTCACACCACCTGCTCAGCTGATCAGAGAGAAATAGTTCCACGTCTTTAGAAGATGCTGATTTGAGAGTGCCCGTTGAAAGCTGTGTGGCCCCGACTCACCTAGATACCTGAGGGACCTCGTTCTGCCAGCATTGCCCCTTCGATGGAGGAGGAATCGAATGGTGAGAGAAGACACTGGGAAGTGGAGTCCACACTAGTCCTACAGCTCCAGTCTGGCGTTAGGAGATGAACCCTATATCACTACTGTTTTATAATCGCAGCACAAATTAACAGCGTTATGGAAGATATACAACCAACTGTAAAAGGtctggaaataataaataaaaggttgaagtttatttacacaaaattaACATTGTGCTGTTGAAGGCTCACGGAGGGGACAGTCATGAACCCCCTTTTGATACATTCAGGACAGAGGCGAACACATCTGACCTGGGAGTGAGAGTGTCTTGTGGTTGCAGGTTTGGGAGTTGATGTGATGACAGATCTGAGAATCGTCTGTAAGATCTCTTCAGCGATTCCTATTGGTCCCATTTCTTCAGTGTGGGTTTGATTATtgtactgaattaaaacaataaacctgGTTGATTAA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:0016773 phosphotransferase activity, alcohol group as acceptor molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184706 lncRNA upstream 4503 21398676 ~ 21398971 (+) True G146815
TU184664 lncRNA upstream 74572 21326532 ~ 21328902 (+) True G146782
TU184620 lncRNA upstream 338566 21063973 ~ 21064908 (+) True G146749
TU184569 lncRNA upstream 536068 20867206 ~ 20867406 (+) True G146703
TU184567 lncRNA upstream 547556 20855711 ~ 20855918 (+) True G146701
TU184834 lncRNA downstream 253120 21710357 ~ 21712783 (+) True G146915
TU184849 lncRNA downstream 287642 21744879 ~ 21745451 (+) True G146928
TU184983 lncRNA downstream 490849 21948086 ~ 21948618 (+) True G147022
TU184985 lncRNA downstream 493091 21950328 ~ 21950587 (+) True G147024
TU184988 lncRNA downstream 499364 21956601 ~ 21957045 (+) True G147027
AMCG00005303 mRNA upstream 344185 21050477 ~ 21059289 (+) True AMCG00005303
AMCG00005302 mRNA upstream 371481 21022204 ~ 21031993 (+) True AMCG00005302
AMCG00005284 mRNA upstream 549444 20850904 ~ 20854030 (+) True AMCG00005284
AMCG00005283 mRNA upstream 588724 20807201 ~ 20814750 (+) True AMCG00005283
AMCG00005281 mRNA upstream 597093 20803621 ~ 20806381 (+) True AMCG00005281
AMCG00005325 mRNA downstream 8331 21465568 ~ 21479216 (+) True AMCG00005325
AMCG00005326 mRNA downstream 42171 21499408 ~ 21509612 (+) True AMCG00005326
AMCG00005327 mRNA downstream 71985 21529222 ~ 21540905 (+) True AMCG00005327
AMCG00005329 mRNA downstream 109401 21566638 ~ 21571522 (+) False AMCG00005329
AMCG00005328 mRNA downstream 125939 21583176 ~ 21589683 (+) True AMCG00005328
TU184679 other upstream 62762 21337432 ~ 21340712 (+) True G146790
TU184526 other upstream 600294 20797458 ~ 20803180 (+) False AMCG00005280
TU184446 other upstream 701070 20699486 ~ 20702404 (+) True AMCG00005286
TU184436 other upstream 733305 20661926 ~ 20670169 (+) True G146596
TU184405 other upstream 878655 20521649 ~ 20524819 (+) True G146575
TU184762 other downstream 113293 21570530 ~ 21572321 (+) True AMCG00005329
TU184830 other downstream 223471 21680708 ~ 21704394 (+) True AMCG00005340
TU184875 other downstream 354495 21811732 ~ 21848136 (+) True G146952
TU184903 other downstream 428033 21885270 ~ 21887445 (+) False AMCG00005345
TU184980 other downstream 488321 21945558 ~ 21947991 (+) True G147021

Expression Profile