RNA id: AMCG00005312


Basic Information

Item Value
RNA id AMCG00005312
length 1439
RNA type mRNA
GC content 0.56
exon number 6
gene id AMCG00005312
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21457408 ~ 21462473 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGATCTGGCTGATGATTAACAGGCTGTCAGATGTATTGTCCACGGTGATGCCATCACTCCACATTTCCTGGTCAACTCTTCTCAGAAGCAGCTGCCGTCTCGACACCTCCGACTCGACGCACAGCCATGCACGCCAGCTGCTCACGGTCAAGCCCAAGGTCGGAGAGCAGCGGGGTTCAAAGTCACACCTGCCACGGGACGGGCccacggagagagagacacggcTTTCCACACGCGAGCCACAAGGACAGACAGAGCCGCCCCAGTGCCCACAGAGACTGGCACTGCCCGCTCCCTGTCTGATCGCCTACTGGAGACACGGCTCCTGGCTCGGCGCGATCAGCTGCCCTCTCTGCAGGCAAAAGGTCAGCGTGCTGCATCACCTGTTCACTGAGTCCATCGCTGACCGGCAGGAGCGCCAGGTGCTGCTGGACATCCACGACTACAACAAGCGCTTCTCTGGAGCTCCGCGCCCGGTGGCAGACTATCTGTACGACATGCCCACGTTCCTGCACCTGGCGCTCCGTGGTCTCTGCACCATGGGCGGCCTGGTGTGGGTGTTCTTCCTGCGGGTGGCGGTGTGCTGCTTCGGCGCCGTCATGTCACTTGCCTCCCCGCTGGACTCCATCCCCGAGCCCTTCTGCGGTGTGCTGGGGGCCCTGGACGACCTGGTGGTGGTCTTCCTGCTGCTCATCTGCGTTGTCAACATCAACCAGCAGATTGGCCCGGATAGCGGCACCCTCCCGCCCGGTGCCACACAGCAGGGTGTGCTCTCCGACGCCCTGTAACGCAGGGACAATGCGGGGGACAATGTCTGGACCTGTGTGGGGCACTGGGGGAGGGATGGCCTGGGAGGGATGTCCACCTCCAGACATGGATGTCCATGTCTCAAGACAGGAActcagaaaggaagaaaaagagaacaGTTGGGCAGTTGACGTATAAAAACTCAAGAACGGTGCCATGAGAAGAAAGACCCATTTATTTTCCCGCATCTTGCTGGGTTGGTAGTGTCTGGACCCAAGAACGTCATAAAACTGCTttgttgaaggaaaaaaactgtgAACATCCCACGGTTAGGTACTTTCCGATTGTTCTTTCTCCCAATCGTCTCCAGGACTGTAGGAGAGACATGGAATGGATGGGGGGATTGAAGAGATGTCATTTCCAGTGCTGCCCGTCCGCACCGGCAGTGGTCCCGTCACTTGGTCATGCAGGTGTGTCACCCCACTACATGACACGGCAGGCTCGTGAAATGCTTACCACTTTAAAAGACCCTAAACTCGACAGACGTGTATGTTTCAGTTGAGCCTCCAGTTTCATGTCGAGGCAGCAACGCAGCATCCTCAAGAACAATCGAAGGTGAACATAATagcaacaacaatgacaatagTAATACAGAagtgcaatatttaaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184704 lncRNA downstream 75839 21381306 ~ 21381569 (-) True G146813
TU184568 lncRNA downstream 599606 20857600 ~ 20857802 (-) True G146702
TU184511 lncRNA downstream 700087 20756956 ~ 20757321 (-) True G146652
TU184485 lncRNA downstream 749802 20694815 ~ 20707606 (-) True G146631
TU184476 lncRNA downstream 821199 20634124 ~ 20636209 (-) True G146623
TU184738 lncRNA upstream 23476 21485949 ~ 21487711 (-) True AMCG00005333
TU184761 lncRNA upstream 97576 21560049 ~ 21561461 (-) True G146857
TU184798 lncRNA upstream 127523 21589996 ~ 21606535 (-) True G146891
TU184859 lncRNA upstream 283071 21745544 ~ 21745808 (-) False AMCG00005343
TU184873 lncRNA upstream 344507 21806980 ~ 21807306 (-) True G146951
AMCG00005310 mRNA downstream 118180 21338245 ~ 21339228 (-) True AMCG00005310
AMCG00005306 mRNA downstream 123872 21331248 ~ 21333536 (-) True AMCG00005306
AMCG00005309 mRNA downstream 127418 21327357 ~ 21329990 (-) True AMCG00005309
AMCG00005307 mRNA downstream 131313 21317619 ~ 21326095 (-) True AMCG00005307
AMCG00005308 mRNA downstream 140423 21310065 ~ 21316985 (-) True AMCG00005308
AMCG00005333 mRNA upstream 23673 21486146 ~ 21486358 (-) False AMCG00005333
AMCG00005331 mRNA upstream 41692 21504165 ~ 21521031 (-) True AMCG00005331
AMCG00005332 mRNA upstream 83962 21546435 ~ 21548854 (-) True AMCG00005332
AMCG00005334 mRNA upstream 86384 21548857 ~ 21551959 (-) True AMCG00005334
AMCG00005330 mRNA upstream 110155 21572628 ~ 21580706 (-) True AMCG00005330
TU184470 other downstream 846765 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1177662 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1433901 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 1433901 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 1695962 19758232 ~ 19761446 (-) True AMCG00005240
TU184860 other upstream 282403 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 508562 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 568352 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 574122 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 621244 22083717 ~ 22084944 (-) True G147108

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) LOC110521605 False 2698 mRNA 0.45 5 NC_050570.1 25412313 ~ 25424178 (+)