RNA id: AMCG00005314



Basic Information


Item Value
RNA id AMCG00005314
length 1159
RNA type mRNA
GC content 0.59
exon number 6
gene id AMCG00005314
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21622078 ~ 21624606 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCGCAGCACTGCGGGGCACATAGCGCCACCGCCCAGCTTCGGCCGTGTGAGCGGCGTCCTTACAGCCCAGGTCGGACACTGTCCTTGAGCGGACAGCCGGGCTCCTCGGCTCGGCTCGGTTCGGCTCGGGTCAGGTCGGGTCGGGTCGGGGGACACCGAGCGCATTGCCAGCTCTTGTTTCCGGGGGGACCCCCTCACTGCTGCACAGCCTGCCGGTCGAGCCGCGGATAGAGGACACGCTGATTGTGCAAGTGCGCGTATTTACTCCGGCTTGTATTACTTtgtttgtatgatttaaaacaataggAACATGTCATTGTTCTCAGAATGCGCGTGTCGTTCTCACGCAGTATGACGTACATCAGTCTAGACGACAGGGGCATTTCCCCACACGAACCCCGACGCGGCTGCATGGCGCTCATCgtgcagTCGTGATGGTGGTGCTATCAAAGGAGTTTGGTTATGTGGTTCTGACGGGCGCCGCCAGCTTCGTCATGGTCGCCCACCTGACCATCAACGTTGGCAAAGCCCGCAAGAAGTACCATGTGGAATACCCTCAGATGTACAGCGACGACCCGGAGAACGGCAAGATCTTCAACTGCATCCAGCGCGCTCACCAGAACACCCTGGAGTCCTACCCTGCGTTCCTGTTCTTCCTGGTCATGGCGGGCATTCATAGCCCACGTGCGGCCAGCGCACTGGGGCTGACCTGGACCGTGGGCCGGGAGGTGTTCGCGCATGGATACTCCACTGGAGACCCCGAGAAGCGTAGGTTTGGGCTGTTCGGGAACCTGGCGCTGTTGGGGCTGGTGGGTCTGTCGGTGGACTTCGGCAGAACCCTGCTGGGCTGGGGGGTCAAGCACTGCTGTCACTGAGCCCCCCCCACTGAGCGAGAGATGTACTACACCGAGCTGCTGCCTGCTTGATTGCTTATCTGAGCCGTGCAGAAGTCAATCGAGTAATTAAGGAGTTGGTGAGGGGTCCAGCTGGAGAAGACGGTCGTCCCTCTTCCCCCCCATgctccctcccttctcttctcTGTCCTGCGTCTCTGAAGGGCAGCTCCTGTCTGCGGCTCAGACCCGCGTCTCGCTCAGCAGGGACACCAGCTCTGTCACTTGTCAACAACTTTACTTGGAATAAAAACTGTCAATTAAAA

Function


GO: NA

KEGG:

id description
K00799 GST, gst; glutathione S-transferase

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU184706 lncRNA upstream 223107 21398676 ~ 21398971 (+) True G146815
TU184664 lncRNA upstream 293176 21326532 ~ 21328902 (+) True G146782
TU184620 lncRNA upstream 557170 21063973 ~ 21064908 (+) True G146749
TU184569 lncRNA upstream 754672 20867206 ~ 20867406 (+) True G146703
TU184567 lncRNA upstream 766160 20855711 ~ 20855918 (+) True G146701
TU184834 lncRNA downstream 85751 21710357 ~ 21712783 (+) True G146915
TU184849 lncRNA downstream 120273 21744879 ~ 21745451 (+) True G146928
TU184983 lncRNA downstream 323480 21948086 ~ 21948618 (+) True G147022
TU184985 lncRNA downstream 325722 21950328 ~ 21950587 (+) True G147024
TU184988 lncRNA downstream 331995 21956601 ~ 21957045 (+) True G147027
AMCG00005313 mRNA upstream 3897 21606202 ~ 21618181 (+) True AMCG00005313
AMCG00005328 mRNA upstream 32395 21583176 ~ 21589683 (+) True AMCG00005328
AMCG00005329 mRNA upstream 50556 21566638 ~ 21571522 (+) False AMCG00005329
AMCG00005327 mRNA upstream 81173 21529222 ~ 21540905 (+) True AMCG00005327
AMCG00005326 mRNA upstream 112466 21499408 ~ 21509612 (+) True AMCG00005326
AMCG00005315 mRNA downstream 6374 21630980 ~ 21635167 (+) True AMCG00005315
AMCG00005316 mRNA downstream 16785 21641391 ~ 21652788 (+) True AMCG00005316
AMCG00005317 mRNA downstream 37743 21662349 ~ 21666890 (+) True AMCG00005317
AMCG00005322 mRNA downstream 52981 21677587 ~ 21679103 (+) True AMCG00005322
AMCG00005340 mRNA downstream 78573 21703179 ~ 21704518 (+) False AMCG00005340
TU184762 other upstream 49757 21570530 ~ 21572321 (+) True AMCG00005329
TU184679 other upstream 281366 21337432 ~ 21340712 (+) True G146790
TU184526 other upstream 818898 20797458 ~ 20803180 (+) False AMCG00005280
TU184446 other upstream 919674 20699486 ~ 20702404 (+) True AMCG00005286
TU184436 other upstream 951909 20661926 ~ 20670169 (+) True G146596
TU184830 other downstream 56102 21680708 ~ 21704394 (+) True AMCG00005340
TU184875 other downstream 187126 21811732 ~ 21848136 (+) True G146952
TU184903 other downstream 260664 21885270 ~ 21887445 (+) False AMCG00005345
TU184980 other downstream 320952 21945558 ~ 21947991 (+) True G147021
TU184986 other downstream 327963 21952569 ~ 21952882 (+) True G147025

Expression Profile