RNA id: AMCG00005318


Basic Information

Item Value
RNA id AMCG00005318
length 1475
RNA type mRNA
GC content 0.66
exon number 10
gene id AMCG00005318
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21619224 ~ 21631114 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGATACACCTCGAAGCCCCGCGGAGACAGAGCCGCACTGAGCGCCCGCTCCGCGCTGCCCGCGTCCAGTCCAGCCTCCGCCATGACGCCCTCGAAGCGCAGCCGCAGTGCACCATGGGGGCCGGAGTGCTCCATCAGAGCCAGGTGGAACTACAACTCCCAGAAGCCCCCGGGCGGGCTGGCCGCTGTGTATTTATGGTCTCACGCACTGCGGCGGGACGAGAGACTGACAGCGGCAGGACGCTTCTCCAAAGaggTGCTCCTGGATGGTGGGGGTCCCCATGCTGTGCGTTTTGAGGACCCCCCGCTGTCCCGCTGTCCCGCCCCCTCCTCGCGCTCGCTCAGCCCCGGGCCCCAGTGGGGGAGCCTGGCAGGGGGGCAAGATCAGGCCGTCGCGTCGCTGGCGCAGGCCGTGCAGGCCCTGGAGAGACACCGAGGCCAGCAGGAGCGCCGCCTGGAGGCACTGGAAGATGAGCTGcggagactgagagagagggagcgggagagggagagggagtggagagagagggagcgggaacaggagagagagagggagagagagagggagcgggagcaggaaagagagagggagagggagcggggCAGCCCCGAGCTGGAGCGGCGCGTGGACCAGTGGCGCAGGGAGGTGAGCACGGAGCTGCATGTCCTGAGGGAGAGGATCGACAGAGCGCTCGGCCGGGCAGCGCGGGAGGAGAGTGTCGGCGGAGGGGTGCGTCGAGTGGAGCTGGAGCTGCGCAGAGAGCTGGATGATGTGAGGCGACGAGCCCTGGAGCGCCTGACCCAGCGCTGCCGCAGCCACAGCCTGGAGCTCAGCAGAGCGCAGTCCCAGCACTGCGTTACACAGCACTGCGTTAAACAGCACAGCCTGGACTGCCtcagGTCCTCGGTGTCGGAGCTCAGAGGACAGGAAACCCGAGACAGACAGCCTGCTGTGCCCCCCCCAGGTGTTGGGGGCGCTGACCCGCTGGGGGAGGACTCGGACGGGGGGCTCAGTCCCAGCCTCAGCCTGGGGGACGTCAGCTCTGACAGCCTGTCCTCACTGGGGGAGCCGCGccctgcagGGGGCAGACGCTGCCCTCAGCCGCACACAGGAGACACGGGGGAGACGGGGAGCTGGTGGGACGAGGACGTGGATATTGACGTGAGTTTGGATGAAGACCTGGATGAGCTGTTGGACAGCCCGGCCCCGCTCGACCTCCGAGACCTTTAACCTTTCACCCCTCTGCCACGGCAGCGCTCCTTCAGCCCCCAACACACACGCGAACACACGCATGTACCGGTGTGCACGCCCATGCAATGGGACAGCATTAGACTGGGGACAAGGGGAGGGATAGGGATAGAGAGAAGGACGGAGGAGGAGCGATGCAGCATGACGATGACATCATCCCCGAGCTCGACTCCCTgccccccagcagcagcagaaactggacaattaaacatttctttacACTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184798 lncRNA downstream 12689 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 57763 21560049 ~ 21561461 (-) True G146857
TU184738 lncRNA downstream 131513 21485949 ~ 21487711 (-) True AMCG00005333
TU184704 lncRNA downstream 237655 21381306 ~ 21381569 (-) True G146813
TU184568 lncRNA downstream 761422 20857600 ~ 20857802 (-) True G146702
TU184859 lncRNA upstream 114430 21745544 ~ 21745808 (-) False AMCG00005343
TU184873 lncRNA upstream 175866 21806980 ~ 21807306 (-) True G146951
TU185082 lncRNA upstream 350944 21982058 ~ 21982521 (-) False AMCG00005363
TU185126 lncRNA upstream 501152 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 598085 22229199 ~ 22229991 (-) True G147156
AMCG00005324 mRNA downstream 13305 21594026 ~ 21605919 (-) True AMCG00005324
AMCG00005330 mRNA downstream 38518 21572628 ~ 21580706 (-) True AMCG00005330
AMCG00005334 mRNA downstream 67265 21548857 ~ 21551959 (-) True AMCG00005334
AMCG00005332 mRNA downstream 70370 21546435 ~ 21548854 (-) True AMCG00005332
AMCG00005331 mRNA downstream 98193 21504165 ~ 21521031 (-) True AMCG00005331
AMCG00005319 mRNA upstream 29394 21660508 ~ 21661923 (-) True AMCG00005319
AMCG00005321 mRNA upstream 36975 21668089 ~ 21668268 (-) True AMCG00005321
AMCG00005320 mRNA upstream 37429 21668543 ~ 21675836 (-) True AMCG00005320
AMCG00005323 mRNA upstream 46294 21677408 ~ 21680483 (-) True AMCG00005323
AMCG00005341 mRNA upstream 79391 21710505 ~ 21717461 (-) True AMCG00005341
TU184470 other downstream 1008581 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1339478 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1595717 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 1595717 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 1857778 19758232 ~ 19761446 (-) True AMCG00005240
TU184860 other upstream 113762 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 339921 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 399711 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 405481 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 452603 22083717 ~ 22084944 (-) True G147108

Expression Profile