RNA id: AMCG00005319


Basic Information

Item Value
RNA id AMCG00005319
length 965
RNA type mRNA
GC content 0.64
exon number 3
gene id AMCG00005319
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21660508 ~ 21661923 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGGGGGGCGAGGCGGAGCGGCGTGAGGCGCGGCGGGGGGATGCCAGGCTGGCGCAGGGGCTGCAGcggctggaggaggcccggctGTACCACAAGGGAGCACAAAGCCAGGGGTTGGGCCCCCTTGACCCAGAACCTACCCGGCCAGCACCACCCTACACGAGAGCCTTCCTACCCACAATCCCCCGGGGCAGCAGAGAGGACGAGCGGTTCAGGCACCAGCGGCTGCAGAGGCTCCGGCACAGCCACGCCGACGGCCCGTCCCCCAGCCTCCAGGTGCGGGTCCGAGAGTTCATGGGCCGGGGTGGCGAGGGCCCGGCGGAGGGGGAGGGCGAGAGCTCCACAGTGCCGCTCTGTCTGCCAGACGTTAACGCGCAGAACCTGGGCCGACGGGGCAGCTCGCCGCTGAGAGAGAGGCGcgatggagagagagacggagagagagaccagGACGGAGAGAGGGAccgggacagagagagagtcaaGGACGGAGGCCTCAAGGTCCAGGCCTCCCCCTCCCACGTGCTCTCTCTGGCTCCGGACGGTCGTCTGCGCACCGTGTACACGCTGCCCAGCTTTCCGCAAGCGCTGGCGGAGGCCCGCCGGGCTCGTTACTTGCGGTACCGCGGCCGGCCCGAGTGCGAGCGTGAGTTGACCCTGAGAGAGATCTTCGGAAGGCCAGACAAGGACGGCCAGCCCAGATGACCCCTGACCCCCTGGCCCTCTCAGTCCCACCGCCCCTGGCCCtgtctgacccctgaccctcagtgtgtctgtcaaaTCACAGGATACAAAGAGGCTCCCGAAGACCCCACACCTGGATCACAGACATGCCAAACGAAAGTCTAGATTCTCTTTAAcatcatatgtgtgtgtgtgtgtgatatgttAAAGAACTTGCTTCCGTACACATGTTGTATTTTACGGAGCACCGTACCAATAAAGTTTGTCATGTGACCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184798 lncRNA downstream 53973 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 99047 21560049 ~ 21561461 (-) True G146857
TU184738 lncRNA downstream 172797 21485949 ~ 21487711 (-) True AMCG00005333
TU184704 lncRNA downstream 278939 21381306 ~ 21381569 (-) True G146813
TU184568 lncRNA downstream 802706 20857600 ~ 20857802 (-) True G146702
TU184859 lncRNA upstream 83621 21745544 ~ 21745808 (-) False AMCG00005343
TU184873 lncRNA upstream 145057 21806980 ~ 21807306 (-) True G146951
TU185082 lncRNA upstream 320135 21982058 ~ 21982521 (-) False AMCG00005363
TU185126 lncRNA upstream 470343 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 567276 22229199 ~ 22229991 (-) True G147156
AMCG00005318 mRNA downstream 29394 21619224 ~ 21631114 (-) True AMCG00005318
AMCG00005324 mRNA downstream 54589 21594026 ~ 21605919 (-) True AMCG00005324
AMCG00005330 mRNA downstream 79802 21572628 ~ 21580706 (-) True AMCG00005330
AMCG00005334 mRNA downstream 108549 21548857 ~ 21551959 (-) True AMCG00005334
AMCG00005332 mRNA downstream 111654 21546435 ~ 21548854 (-) True AMCG00005332
AMCG00005321 mRNA upstream 6166 21668089 ~ 21668268 (-) True AMCG00005321
AMCG00005320 mRNA upstream 6620 21668543 ~ 21675836 (-) True AMCG00005320
AMCG00005323 mRNA upstream 15485 21677408 ~ 21680483 (-) True AMCG00005323
AMCG00005341 mRNA upstream 48582 21710505 ~ 21717461 (-) True AMCG00005341
AMCG00005342 mRNA upstream 78596 21740519 ~ 21743898 (-) True AMCG00005342
TU184470 other downstream 1049865 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1380762 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1637001 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 1637001 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 1899062 19758232 ~ 19761446 (-) True AMCG00005240
TU184860 other upstream 82953 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 309112 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 368902 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 374672 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 421794 22083717 ~ 22084944 (-) True G147108

Expression Profile