RNA id: AMCG00005320


Basic Information

Item Value
RNA id AMCG00005320
length 1986
RNA type mRNA
GC content 0.67
exon number 12
gene id AMCG00005320
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21668543 ~ 21675836 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGACGCCTGCCCAGCGCCCCTGACGGAGCTGTGCCTGGCCCTGCTGGCGCACAGTCTGGACCGCTTCAGTGTGGAGCGGCCGGACGGATCGCTGTCCCTGCGCCAGACCCTGGTCTTCCCCCAGGAGCTCGCCGACCAGTTGCTGCACAAGATGGCCACTGAGGgtCTGCTCAATGATAGCACGGTGGGCGTGTTCCGTAACTGCCAGCAGCTCCGCCTGCGCCGGGCCTGCATCCGCACCGCGCGCATCTCCGCCGAGGCCTTCCGCCGGGCGCTGTGCCCCCACCGGCTGCTGGAGCTAGATGCGGCGGGGGTGAACGCCGACCTAACCATCGCCGACATCCTGCGCGGGCTGAGCGAGCACAAGGAGGCCTGCGAGGGGCTGCAGCGGCTGGTGCTCACCGGCCTCACCATGTCCCTGGAGGAGCCGGCCGGCCGCTGCAGCCTGTTCTCGCCGCTGTTGGGGCTGCGCTCGCTCTGCCTGGCCAACGTGGACTTCTACGACCAGGGCCTGGCCGAGGTGTGCGCCCTGCCGCGGCTGGAGAGCCTGGACATCTCCAACACCTCAGTCACCAGCCTGATGCCCCTGCTGAGCTGCCGCGGCCGGCTGCGCTCACTCACCATGCACCAGCTGAAGCGCCTGGAGATGAGCACGCCACAGCTGCTGGACGTGCTGGCgcagctggaggagctgcagcaCCTGGACATCTCCGACGACAAGCAGTTCACCTCGGACGTGGCGCGCCAGCTGCTGGAGCGGCCCGGCCTGCTGCCCCGGCTGGTGTCGCTGGACGTGTCAGGCCGCAAGCAGGTGACGGACGCGGCGGTGTGCGGCTTCGTGGAGCGCCGTCCCGGAATGCAGTTTGTGGGGCTGCTGGCCACCGACGCTGGCTTCTGCGACCTGTTGTCCGGGGAGGGCAGCCTGAAGGTGACCGGGGAGGCCAACGAGACCCAGATCTGCGAGGCGTTGCGCCGCTACAGCGAGAGGGAGTGCTTCGTGCGGGAGGCACTGTTCCACCTGTTCAGCCTGACCCACGTGATGGAGCGCCCGCGGCCCGACATCCTGCAGCTTGTGGTCTCGGGGATGCAGAGTCACCCCCTGACGCTGCACGTGCAGCTGGCAGCGAGTGCCTGCGTCTTCAACCTGACCAAGCAGGAGCTGGCGGCGGGGATGCCTGTGAGGCTGCTGGGCTCCGTCacacagctgctgctggaggCCATGAGGAACTTCCCCAACCACCAGCAGCTGCAGAAGAACTGCCTGCTGTCCCTGTGCAGCGACCGCATCCTGCAGGAGGTGCCCTTCAACAGGTTCGAGGCAGCCAAGCTGGTGATGCAGTGGCTGTGTAACCATGAGGACCAGAACATGCAGAGAATGGCCGTTGCCATCATCTCCATCCTCGCTGCCAagCTGTCCACAGAGCAGACGGCACAGCTGGGCGCTGAGCTCTTCATCGTGAGGAACAACATCGCCGAGGTGCGGGAGCTGCACCGGGAGCTCATGTGTCCCGGCTTCGTGAGCCACATCCGCCAGCTGCTGCACAGCTCCGAGGTGGAGGTCAGCTACTTCGCCGCCGGGATCCTGGCGCACCTGACGTCCCGCGGGGAGGAGGCCTGGACCCTGGAGCTGCCCCTGCGCCACgacctgctgcagcagctgcactCTACCATCCAGGATTGGCCGACCCCAGACTGTGAGATGGTGGCGTACAGGTCGTTTAACCCTTTCTTCCCCCTGCTGGAGTGCGTCCAGACGCCGGGGGTGCAGCTGTGGGCAGCCTGGGCCATGCAGCACGTGTGCAGCAAGAACGCCTCGCGGTACTGCAGCATGCTGATCGAGGAGGGGGGCCTGCAGCACCTGCACAACGTGACCTCGAACCCCGACACGCACCCCGACGTGTGCCGCCTGGCCAACAGCATCCTGGACAGCCTGGAGCGACACCGCACCCGCGCCGGCCACGGGCCCCCCCGCCACGCCTGA

Function

GO: NA

KEGG:

id description
K10350 ZYG11; Zyg-11 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184798 lncRNA downstream 62008 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 107082 21560049 ~ 21561461 (-) True G146857
TU184738 lncRNA downstream 180832 21485949 ~ 21487711 (-) True AMCG00005333
TU184704 lncRNA downstream 286974 21381306 ~ 21381569 (-) True G146813
TU184568 lncRNA downstream 810741 20857600 ~ 20857802 (-) True G146702
TU184859 lncRNA upstream 69708 21745544 ~ 21745808 (-) False AMCG00005343
TU184873 lncRNA upstream 131144 21806980 ~ 21807306 (-) True G146951
TU185082 lncRNA upstream 306222 21982058 ~ 21982521 (-) False AMCG00005363
TU185126 lncRNA upstream 456430 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 553363 22229199 ~ 22229991 (-) True G147156
AMCG00005321 mRNA downstream 275 21668089 ~ 21668268 (-) True AMCG00005321
AMCG00005319 mRNA downstream 6620 21660508 ~ 21661923 (-) True AMCG00005319
AMCG00005318 mRNA downstream 37429 21619224 ~ 21631114 (-) True AMCG00005318
AMCG00005324 mRNA downstream 62624 21594026 ~ 21605919 (-) True AMCG00005324
AMCG00005330 mRNA downstream 87837 21572628 ~ 21580706 (-) True AMCG00005330
AMCG00005323 mRNA upstream 1572 21677408 ~ 21680483 (-) True AMCG00005323
AMCG00005341 mRNA upstream 34669 21710505 ~ 21717461 (-) True AMCG00005341
AMCG00005342 mRNA upstream 64683 21740519 ~ 21743898 (-) True AMCG00005342
AMCG00005343 mRNA upstream 69738 21745574 ~ 21747798 (-) True AMCG00005343
AMCG00005347 mRNA upstream 162990 21838826 ~ 21841316 (-) True AMCG00005347
TU184470 other downstream 1057900 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1388797 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1645036 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 1645036 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 1907097 19758232 ~ 19761446 (-) True AMCG00005240
TU184860 other upstream 69040 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 295199 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 354989 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 360759 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 407881 22083717 ~ 22084944 (-) True G147108

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034287 False 3525 mRNA 0.49 16 NC_007131.7 16173681 ~ 16201879 (+)
grasscarp (Ctenopharyngodon idella) CI01000051_03800655_03819155.mRNA True 2267 mRNA 0.55 16 CI01000051 3800655 ~ 3819197 (+)