RNA id: AMCG00005323


Basic Information

Item Value
RNA id AMCG00005323
length 861
RNA type mRNA
GC content 0.69
exon number 3
gene id AMCG00005323
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21677408 ~ 21680483 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGGGCAACCGAACCACAGCACTGCCCCCCACTCTCAGAGCCCGGCTCCTGCAGGACTGATCGGTCTAAACGGGCCATTCTTCTTACTCCGACACTGCTTgGATATGATTTCTCTCCCTACAAAAACAACAGTCCGGCGGCGTCTCAGGCCTGCAGCGCTCACAGTGGCAGCGGTTCAGAAAGCAAGCTGCCGTCACTCAGGGGTCCCAGACCGGCCAGACCTCCACGTCCCGATCCCCCCCGAGTGAGCCCGAGACCCCGCTCCACAGCTCCAGAGGTGGGGAGCCCCTCTCCCCGTGGCCCCCTGCCTCCCTCAGTCCCCGAAGCTGAGCCCGGACTCCTTCTGCTGGCCGTGCAGCTCCCGGGCGCGGTTCTTCAGCTCCTCGGCGCGCCCGTCATCCCGGGCCGCCCCCTCACCCAGCTTGTACATGCGGCTGGCGTTGGCGCAGCCCCACACGTGGCCCAGCTGGCAGGCCTGCAGGGCGAAGTCGAGGGCCCGTGCCATGTCCTTGCCCAGGCCGGGGGCACCCGTGATGTACAGGGCGCTCAGGTTGAAGCAGCTGGGCGCGAACCCCCCGCTGCACGCCCGCTCGTAGTACTTCCTCACCAGCCCGGCGTCCGCCATGGGCGCCGCCTCGCCCCCTTCTCCTCCCCCGGTTCCTCCCTGCAGCGCGCGGCCGTCGTGGGCCAGCAGCCCCACGTTACCCGGGCTTGTCCCCAGGCTGTGACCTTGGCCACCGGTGTTTGTGGCGCGCAGTGCGGGGGGCGGCGTGGCCGGTGTGCTGCTCTGACAGCCGGCCCTTGTGATGCTCACTGGTGTCTAGCGCTCCGCCTGCTCGCTGCACGGTACCGGAGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184798 lncRNA downstream 70873 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 115947 21560049 ~ 21561461 (-) True G146857
TU184738 lncRNA downstream 189697 21485949 ~ 21487711 (-) True AMCG00005333
TU184704 lncRNA downstream 295839 21381306 ~ 21381569 (-) True G146813
TU184568 lncRNA downstream 819606 20857600 ~ 20857802 (-) True G146702
TU184859 lncRNA upstream 65061 21745544 ~ 21745808 (-) False AMCG00005343
TU184873 lncRNA upstream 126497 21806980 ~ 21807306 (-) True G146951
TU185082 lncRNA upstream 301575 21982058 ~ 21982521 (-) False AMCG00005363
TU185126 lncRNA upstream 451783 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 548716 22229199 ~ 22229991 (-) True G147156
AMCG00005320 mRNA downstream 1572 21668543 ~ 21675836 (-) True AMCG00005320
AMCG00005321 mRNA downstream 9140 21668089 ~ 21668268 (-) True AMCG00005321
AMCG00005319 mRNA downstream 15485 21660508 ~ 21661923 (-) True AMCG00005319
AMCG00005318 mRNA downstream 46294 21619224 ~ 21631114 (-) True AMCG00005318
AMCG00005324 mRNA downstream 71489 21594026 ~ 21605919 (-) True AMCG00005324
AMCG00005341 mRNA upstream 30022 21710505 ~ 21717461 (-) True AMCG00005341
AMCG00005342 mRNA upstream 60036 21740519 ~ 21743898 (-) True AMCG00005342
AMCG00005343 mRNA upstream 65091 21745574 ~ 21747798 (-) True AMCG00005343
AMCG00005347 mRNA upstream 158343 21838826 ~ 21841316 (-) True AMCG00005347
AMCG00005346 mRNA upstream 164561 21845044 ~ 21861431 (-) True AMCG00005346
TU184470 other downstream 1066765 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1397662 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1653901 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 1653901 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 1915962 19758232 ~ 19761446 (-) True AMCG00005240
TU184860 other upstream 64393 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 290552 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 350342 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 356112 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 403234 22083717 ~ 22084944 (-) True G147108

Expression Profile