RNA id: AMCG00005325


Basic Information

Item Value
RNA id AMCG00005325
length 3570
RNA type mRNA
GC content 0.55
exon number 20
gene id AMCG00005325
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21465568 ~ 21479216 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCAGGGCGCACTACGCACGCTGCGTCCCGCCGGCATTCACGTAAAGCGCGCAGCACGTACGCCGCGTCCGGGCGGAAGAGACGGCGCAGGTGAGGTCAGAGGCGGCGGCGGGGACGGAGAGCCGGGGTcggacacacacaggcagacatggAGGCCAAGAAGACGGTGCTCTGCGAGAGTCTCGTCGTCTGGTTACAGACCTTCAACACGGCCTCCCCGTGCCAGACGGTGCAGGACCTCACCTCCGGGGTGCCCATGTCGCAGGCCCTTCATCAGATAGACCCCGCCTGGTTCAGCGAGAGCTGGCTGGGCCGCATCAAGGAAGATGTTGGTGACAACTGGAGACTGAAGATGAACAACCTAAAGAAGATCCTCCAGATGATAGTGGACTACTACAACGAGGTACGCATCGCTGCCGCCGTCCATGCACTGAACCCCGACACACACACGGGCACAAACCAACAGACTGAGCTTCGGCCGCAGCACAGTGGCTGCAGGTCGGCGCTCGGACATCCGGTGGCTTCCTCTCGGCCATCGCCACAATGCAGTGAGTGTCTGTGCTCCGCCCCGTGCCAGGTGCTGGGCCAGCAGATCGCGGACTTCCCTCTGCCGGACCTGAACCGGGTGGCCGAGCACTCGGACCCAGTGGAGCTGGGCCGGCTGCTGCAGCTGATCCTGGGATGTGCCGTGAAGTGCGACCGGAAACAAGagtACATTCAGATCATCATGACTCTGGAGGAGTCCGTACAGCACGTTGTGATGACCGCTATCCAGGAGCTCAAGAAAGCCGTGGAGGAGTTGGCGGAGCTCATGGCAGAGAAAGAGGAGTTGGCACAGAGATGCCAGGAGCTCGACATTCAGgtgaCCGTGCTGCAGGAGGAGAGGAACAGCCTGCTGGCCGAGAACGACGTATTGACCGACCGCGCTAATCAGCTGGACTCCTTCGATGACCCCAACACGCCGTCAGGGAAGAAGTACTgccagctgcagctgcagttcGAGCAGCTACAGGAGGAGAACTTCAGGCTGGAGGCAGCGAAGGACGACTACCGCATCCACTGCGAGGAGCTGGAGAAGCAGCTGGTGGAGGTGCAGCACCGCAACGACGAGCTCACCAGCCTGGCCGAGGAGTCGCGCGCCCTGAAGGACGAGCTGGACATCCTACGGAGCTGCTCTGACCGGGTGGTGAAGCTGGAGGCCTCGGTGGAAACCTACCGGAAGAAGCTAGAGGACCTGACCGACCTGCGGCGGCAGATGCGCACGCTGGAGGAGAAGAACATGACCTACATGCAGAACACAGTCagcctggaggaggagctgcgCAAGGCCAACGCCGCCCGCACGCAGCTGGAGACCTACAAGAGGCAGGTGCAGGAGCTGCACAAGAAGCTGTCGGACGAGTCCAGGAGAGCCGACAACTTGGCCTTCGAGATTAAGAAGTTTGAGGAGCGGCACGAGACCCTGCAGAAGGAGAAAGAGAGACTCATCGTCGAGCGGGACTCCCTGAGGGAGACCAACGAGGAGCTGAGATGCACGCAGGCCCACCAGAACCAGCTGTTGCAAGCCGGGCTGTTGCCTTCAGGAAGTCCCAGCCATGATAACCTGGCTGCCGAAATCCTCCCCATCGAGTACAGGGAGAAGTTCATCCGCCTGCAGCACGAGAACAGGATGCTGCAGCGCGTCGCTGAGCTGCAGCTGCAGGTGGAGGATCTCCAGAAAGCCCTGCAGGGACAGGGAGCCAAACCTGAAGATTCGCATCTGCAGAGGAAGCTGGACGCTCATATGGTGCAGCTCAGCGCAGCCAAGGATGAGCTGATGAAGAAGAAGGAGATGATCGAAGACCTGCAGCCGGAGACGGTGCAGAGCTCGCTGGAGATCGACGAGCTGCATGCGGCGCTGAAGAAGAAGGATGAGGACATGCGCGCCATGGAGGAGCGCTACAAGATGTACCTGGAGAAGGCCCGCAATGTGATCCGGGCCCTGGATCCGAAGCTGAACCCGGCCACCGTGGAGATCCAGTGTCTGAAGAACCAGCTGGCGGAGAAGGACAAGCGCATCGTGGGCCTGGAGCGGGAATGTGAGCAGGCGAAGCTGAGGGAGTACGAGGAGAAGCTGATCGTCACGGCCTGGTACAACAAGAGCCTGAGTTTCCAGAAGCTGGCCATCGAGGGGCGGCTGGccgggaggggggggggcggcaGCGTCGTGCCCCCGGGACAGTCCTTCCTGGCCCAGCAGCGTCAGGTGACCAACGCCAGGCGCACACTGACCCTCAACGCGCCGGCCACGCCCTCCAAGTAGGCACGGCCGCCGCCACGGACATTTCACACACAAGTGGCCTTAGACGTGGGGGTGACCTTACAGAGGGGAGTGAGGACAACTTGAATCCCAGCACTTACCCCCCCGCGCCGCCAGTCAGGGGAGTGTCGTCTGCTGTGTGTGGAGACACGCCTGGCCAGCCGGTTCGCCACCCTTTTCTCAGCGCCGAGCTCAAGATGATTCTCACTcatgatttgtaaaatgtggTAAAGCCCGACCCAAAGCTGGTCATGTCACAATTTTGAACTTGAACTTGTTTTTCCCCGGGGGCTTCTACTAAAGGTTAccaaaaatttaaaaagtatttttaacaaAGTTCTGATTTAGGCTTTAGGTCATTAATGACATCATCTTACTCTCTGTGCATGTTTCTCTGTTTgtgtgagtctctctctctctctctctctctctctatttaaaataatccccTTTGTGGAGTCTGTCCTCAGCGCTGGTCTTTTTTAATTGACAGAGCCAAGCGATCGCTTCACTTCTCTCAGATGAAATGCACAATGATCTTCTTACAATTAAACGATGCTGGACATCAAAACAAACTCGCGTTCTGCAGTGTGACTGCGAAACGTCTTCCGGTTTCTCACAATTatggaaaaaagaaactgtGATCAATATATTACGAACAATGAGACTAAGCCTTACGGGCAGAATCCtgtaaaaaaggaaaggaagtcACGTTTCTAAGACACTAAAATTGAAACGttcagcattatttatttacgaAAGGTTTCTTGACCCGCATGCGCTTTTTAACGGTCAGAGGCCTGTagtagtttttcttttgtagttcAGTGTAGtagtgtttggggggggggggggggggggggggggggggggtaggacAGTGTGGCGATTTTTTACACTTTGAATTCAGGGCCTTGTTGGGATTGATGACCACTCATTTATCTTCTGCAAACTGCTTATCaggctttaaaaacacatttcctgcaGGGGAtataatatcatttttttttcttttaaatatttaatgctcATATTATTGTAAAGTTACAAAACATGTGAGGGGGAGGCTTAAGAAAAAAGagactgtaaaatacttttaagctTAATTATAGAAGaccattgtgttttaaattataattctgTCTGGGGGTTTTGCaccataaagaaacaaaacaataaaccaaaacaGAACAGTAACCAGCGCGTGCCTCTGTTTTGCTCAGCGCAGTTGCTCTAGACTTCCCTCTCCGCTCCCGTCTTCTCTCTGGCC

Function

GO: NA

KEGG:

id description
K16612 HOOK1; protein HOOK1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184706 lncRNA upstream 66597 21398676 ~ 21398971 (+) True G146815
TU184664 lncRNA upstream 136666 21326532 ~ 21328902 (+) True G146782
TU184620 lncRNA upstream 400660 21063973 ~ 21064908 (+) True G146749
TU184569 lncRNA upstream 598162 20867206 ~ 20867406 (+) True G146703
TU184567 lncRNA upstream 609650 20855711 ~ 20855918 (+) True G146701
TU184834 lncRNA downstream 231141 21710357 ~ 21712783 (+) True G146915
TU184849 lncRNA downstream 265663 21744879 ~ 21745451 (+) True G146928
TU184983 lncRNA downstream 468870 21948086 ~ 21948618 (+) True G147022
TU184985 lncRNA downstream 471112 21950328 ~ 21950587 (+) True G147024
TU184988 lncRNA downstream 477385 21956601 ~ 21957045 (+) True G147027
AMCG00005311 mRNA upstream 8331 21403474 ~ 21457237 (+) True AMCG00005311
AMCG00005303 mRNA upstream 406279 21050477 ~ 21059289 (+) True AMCG00005303
AMCG00005302 mRNA upstream 433575 21022204 ~ 21031993 (+) True AMCG00005302
AMCG00005284 mRNA upstream 611538 20850904 ~ 20854030 (+) True AMCG00005284
AMCG00005283 mRNA upstream 650818 20807201 ~ 20814750 (+) True AMCG00005283
AMCG00005326 mRNA downstream 20192 21499408 ~ 21509612 (+) True AMCG00005326
AMCG00005327 mRNA downstream 50006 21529222 ~ 21540905 (+) True AMCG00005327
AMCG00005329 mRNA downstream 87422 21566638 ~ 21571522 (+) False AMCG00005329
AMCG00005328 mRNA downstream 103960 21583176 ~ 21589683 (+) True AMCG00005328
AMCG00005313 mRNA downstream 126986 21606202 ~ 21618181 (+) True AMCG00005313
TU184679 other upstream 124856 21337432 ~ 21340712 (+) True G146790
TU184526 other upstream 662388 20797458 ~ 20803180 (+) False AMCG00005280
TU184446 other upstream 763164 20699486 ~ 20702404 (+) True AMCG00005286
TU184436 other upstream 795399 20661926 ~ 20670169 (+) True G146596
TU184405 other upstream 940749 20521649 ~ 20524819 (+) True G146575
TU184762 other downstream 91314 21570530 ~ 21572321 (+) True AMCG00005329
TU184830 other downstream 201492 21680708 ~ 21704394 (+) True AMCG00005340
TU184875 other downstream 332516 21811732 ~ 21848136 (+) True G146952
TU184903 other downstream 406054 21885270 ~ 21887445 (+) False AMCG00005345
TU184980 other downstream 466342 21945558 ~ 21947991 (+) True G147021

Expression Profile