RNA id: AMCG00005326



Basic Information


Item Value
RNA id AMCG00005326
length 920
RNA type mRNA
GC content 0.50
exon number 6
gene id AMCG00005326
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21499408 ~ 21509612 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTTGTCTTGTCAACAGGGAGAAACAGAGGCTGATGGAGGAAATCAGGAATTTAAAGCCACCACAGGAGGAGTCACCAGAATTCAGGATCCTGACATACGGGCAGATCAGCGCTGGGAAGTCCAGTTTCCTCAACACAGTTGGATCCATCTTCCAGGATCGTTTGGTATCCCGGGCAATAGTTGGCGTGGGCAGTACGAGTGTTACCAAGAAGTTTACTCCCTACCGTTTAAGAGATAAAAAAACAGGATCGAACCTGTCTGTCGCTCTGTGTGACATCATGGGCATGGAGACCAGAGACGGGTTGGGGATACATCCTGATGACATCATCAGTGCAGCAAAAGGACACATAAAAGACGGATACCAGTTTAATCCTGTGTCACCCCTGAAACCTGACCCCAGGAAGAGACCCCCTGTGACAGATCAGGCTCACTGCATCATCTACATTGTGGCAGCGGATCAATTAAGCCTCCTGTCAGATAATATTCTGCATAAGATGAAGAGAGTCCGAGACGAGCTCAATGATATGGTCGCTGGCGAAGTGAAGTGTCTGCAGCAGGGCAGAGAGGATGAGGACGTCAAGGTCGTCATTCAGGCTGCTTTCCTCGTGGTAGTTCTTCACTGGGAGGATGTGGTTGGCTGGGATGCCAACTGTCTGACTGCACTTCTCAATCTGAAACACAAGGagtTCAAGGAGGAAGAATGGAGGCAGGGTCCCTCTGTAAAAGAggagaaagagaggctGATGGAAAAAATCAGGAGCTTAAAGCCGCCAGGTCATGTACAGTCAGAATTTAAAATCCTGATGCACGGACAGATCAGCGCTGGGAAGTCCAGTTTCCTCAACACAGTCGGATCCATCTTCCAGGAACGTGTGGTATCCCGGGCAGTAGTTGGCATGGGCGGTACGAGTGTTACCAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU184706 lncRNA upstream 100437 21398676 ~ 21398971 (+) True G146815
TU184664 lncRNA upstream 170506 21326532 ~ 21328902 (+) True G146782
TU184620 lncRNA upstream 434500 21063973 ~ 21064908 (+) True G146749
TU184569 lncRNA upstream 632002 20867206 ~ 20867406 (+) True G146703
TU184567 lncRNA upstream 643490 20855711 ~ 20855918 (+) True G146701
TU184834 lncRNA downstream 200745 21710357 ~ 21712783 (+) True G146915
TU184849 lncRNA downstream 235267 21744879 ~ 21745451 (+) True G146928
TU184983 lncRNA downstream 438474 21948086 ~ 21948618 (+) True G147022
TU184985 lncRNA downstream 440716 21950328 ~ 21950587 (+) True G147024
TU184988 lncRNA downstream 446989 21956601 ~ 21957045 (+) True G147027
AMCG00005325 mRNA upstream 20192 21465568 ~ 21479216 (+) True AMCG00005325
AMCG00005311 mRNA upstream 42171 21403474 ~ 21457237 (+) True AMCG00005311
AMCG00005303 mRNA upstream 440119 21050477 ~ 21059289 (+) True AMCG00005303
AMCG00005302 mRNA upstream 467415 21022204 ~ 21031993 (+) True AMCG00005302
AMCG00005284 mRNA upstream 645378 20850904 ~ 20854030 (+) True AMCG00005284
AMCG00005327 mRNA downstream 19610 21529222 ~ 21540905 (+) True AMCG00005327
AMCG00005329 mRNA downstream 57026 21566638 ~ 21571522 (+) False AMCG00005329
AMCG00005328 mRNA downstream 73564 21583176 ~ 21589683 (+) True AMCG00005328
AMCG00005313 mRNA downstream 96590 21606202 ~ 21618181 (+) True AMCG00005313
AMCG00005314 mRNA downstream 112466 21622078 ~ 21624606 (+) True AMCG00005314
TU184679 other upstream 158696 21337432 ~ 21340712 (+) True G146790
TU184526 other upstream 696228 20797458 ~ 20803180 (+) False AMCG00005280
TU184446 other upstream 797004 20699486 ~ 20702404 (+) True AMCG00005286
TU184436 other upstream 829239 20661926 ~ 20670169 (+) True G146596
TU184405 other upstream 974589 20521649 ~ 20524819 (+) True G146575
TU184762 other downstream 60918 21570530 ~ 21572321 (+) True AMCG00005329
TU184830 other downstream 171096 21680708 ~ 21704394 (+) True AMCG00005340
TU184875 other downstream 302120 21811732 ~ 21848136 (+) True G146952
TU184903 other downstream 375658 21885270 ~ 21887445 (+) False AMCG00005345
TU184980 other downstream 435946 21945558 ~ 21947991 (+) True G147021

Expression Profile