RNA id: AMCG00005331


Basic Information

Item Value
RNA id AMCG00005331
length 831
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00005331
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21504165 ~ 21521031 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGAAGTGCAGTCAGATGCTTGACATCCCAGTCAGCAACATCCTTGCAGTGAAGAACTACCACGAGGAAACCAGCCTGAATGACAACCTTGACATCCTCGTCCTCTCTGCCCTGCTGCAGATACTTCAGTTTGCCAGTGACCGCTTTTTTACTCCCTGctatttaaaagataaaaaaacaggatCGAACCTGCCTTTCGTTCTGTGTGACATCATGGGCTTGGAGACAGCTGATTGGCAGGGGATACATCCTGATGACATCATCAGTGCTGCAAAAGGATACATAAAAAGCGGATACAAGTTTAATCCTGTGTCACCCCTGAAACCTGACACCAGTAAGAGACCCCCTGTGAAAGATCAGGCTCACTGCATCATCTATGTTGTGGCAGCGGATCAATTGAGCCTCCTGTCAGATAATATTCTGGATAAGTTGAAGAGAGTCCGCAAGGTGCTCACTGATATGGGTCTCCCTCAGGTGGTGCTGTTGACTAAGGTGGACTTAGCCTGTCCATTGGTGAAGGAAGATCTCTGCAATGTGTACAAGagcatttacattaaacaacagTTAGTGCTGTTGACTAAGGTGGACTTAGCCTGTCCGCTGGTTAAGGAGAATCTCCGCAATGTGTACAAGAGCAGTTACATCAAACAACAGATTGAGAAGTGCAGTCAGACAGTTGGCATCCCAGCCAACCACATCCTCCCAGTGAAGAACTACCACGAGGAAAGCAGCCTGAATGACGACCTTGACGTCCTCATCCTCTCTGCCCTGCTGCAGACACTTCACTTCGCCAGCGACTACATCGAGAACATGCAGCAGGCACAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184738 lncRNA downstream 16454 21485949 ~ 21487711 (-) True AMCG00005333
TU184704 lncRNA downstream 122596 21381306 ~ 21381569 (-) True G146813
TU184568 lncRNA downstream 646363 20857600 ~ 20857802 (-) True G146702
TU184511 lncRNA downstream 746844 20756956 ~ 20757321 (-) True G146652
TU184485 lncRNA downstream 796559 20694815 ~ 20707606 (-) True G146631
TU184761 lncRNA upstream 39018 21560049 ~ 21561461 (-) True G146857
TU184798 lncRNA upstream 68965 21589996 ~ 21606535 (-) True G146891
TU184859 lncRNA upstream 224513 21745544 ~ 21745808 (-) False AMCG00005343
TU184873 lncRNA upstream 285949 21806980 ~ 21807306 (-) True G146951
TU185082 lncRNA upstream 461027 21982058 ~ 21982521 (-) False AMCG00005363
AMCG00005333 mRNA downstream 17807 21486146 ~ 21486358 (-) False AMCG00005333
AMCG00005312 mRNA downstream 41692 21457408 ~ 21462473 (-) True AMCG00005312
AMCG00005310 mRNA downstream 164937 21338245 ~ 21339228 (-) True AMCG00005310
AMCG00005306 mRNA downstream 170629 21331248 ~ 21333536 (-) True AMCG00005306
AMCG00005309 mRNA downstream 174175 21327357 ~ 21329990 (-) True AMCG00005309
AMCG00005332 mRNA upstream 25404 21546435 ~ 21548854 (-) True AMCG00005332
AMCG00005334 mRNA upstream 27826 21548857 ~ 21551959 (-) True AMCG00005334
AMCG00005330 mRNA upstream 51597 21572628 ~ 21580706 (-) True AMCG00005330
AMCG00005324 mRNA upstream 72995 21594026 ~ 21605919 (-) True AMCG00005324
AMCG00005318 mRNA upstream 98193 21619224 ~ 21631114 (-) True AMCG00005318
TU184470 other downstream 893522 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1224419 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1480658 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 1480658 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 1742719 19758232 ~ 19761446 (-) True AMCG00005240
TU184860 other upstream 223845 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 450004 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 509794 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 515564 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 562686 22083717 ~ 22084944 (-) True G147108

Expression Profile