RNA id: AMCG00005332


Basic Information

Item Value
RNA id AMCG00005332
length 723
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00005332
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21546435 ~ 21548854 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACTCCATCAAGAGCTACAAGACAATGGTCAGTTCTGTGTCTCAGACCCATGTTCTGCTCATTGGGCCAGTGGGAGCCGGGAAATCCAGCTTCTTCAACTCCGTCAACTCGGTCTTCCGAGGTCACGTGACCAGCCAGGCCATGTCAGGAAGTTCCTCCAGAAGCCTGACCACACAGTTTCGGACCTATTCAGTCAGGGATGGGTGGAAAGGCAAAGCAGTGCCAATCGCCCTGTGTGACACCATGGGACTGGAGGAGGCCACAGAGGCGGGGCTTGATTTGGACGACCTTAGCAGCATTCTGAAGGGCCACATGCCGGACAGGTACCAGTTCAATCCCTCCTTCCCCCTGCGGTCACACAGCCCAGGATTTCGGGCCTCCATCTCACTGAAAGACAAGATCCACTGTGTTGCTTTTGTGATGGACGCCTGCAAAGTGAAGATCATGTCTCCTAAACTGGAGGAGAAAATGAGCACCATGCGCCAGAAGATCAACCAGCTTGGTGTCCCCCAGATGGTGCTGCTGACAAAGGTGGACGAGGCCTGTCCTGAGGTTGCGGAGAACACAAGTAATGTGTACCACAGCAGATACATTCAGAAGAAGATCCACGAGGCCGGGGCGTGCCTGGGAATTCCCGTCTCCTACATCCTTCCCATCCGCAACTACTCcacagagctggagctggacaCCAACACCGACATCCTGATACTGAGCGGGCTC

Function

GO:

id name namespace
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184738 lncRNA downstream 58724 21485949 ~ 21487711 (-) True AMCG00005333
TU184704 lncRNA downstream 164866 21381306 ~ 21381569 (-) True G146813
TU184568 lncRNA downstream 688633 20857600 ~ 20857802 (-) True G146702
TU184511 lncRNA downstream 789114 20756956 ~ 20757321 (-) True G146652
TU184485 lncRNA downstream 838829 20694815 ~ 20707606 (-) True G146631
TU184761 lncRNA upstream 11195 21560049 ~ 21561461 (-) True G146857
TU184798 lncRNA upstream 41142 21589996 ~ 21606535 (-) True G146891
TU184859 lncRNA upstream 196690 21745544 ~ 21745808 (-) False AMCG00005343
TU184873 lncRNA upstream 258126 21806980 ~ 21807306 (-) True G146951
TU185082 lncRNA upstream 433204 21982058 ~ 21982521 (-) False AMCG00005363
AMCG00005331 mRNA downstream 25404 21504165 ~ 21521031 (-) True AMCG00005331
AMCG00005333 mRNA downstream 60077 21486146 ~ 21486358 (-) False AMCG00005333
AMCG00005312 mRNA downstream 83962 21457408 ~ 21462473 (-) True AMCG00005312
AMCG00005310 mRNA downstream 207207 21338245 ~ 21339228 (-) True AMCG00005310
AMCG00005306 mRNA downstream 212899 21331248 ~ 21333536 (-) True AMCG00005306
AMCG00005334 mRNA upstream 3 21548857 ~ 21551959 (-) True AMCG00005334
AMCG00005330 mRNA upstream 23774 21572628 ~ 21580706 (-) True AMCG00005330
AMCG00005324 mRNA upstream 45172 21594026 ~ 21605919 (-) True AMCG00005324
AMCG00005318 mRNA upstream 70370 21619224 ~ 21631114 (-) True AMCG00005318
AMCG00005319 mRNA upstream 111654 21660508 ~ 21661923 (-) True AMCG00005319
TU184470 other downstream 935792 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1266689 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1522928 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 1522928 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 1784989 19758232 ~ 19761446 (-) True AMCG00005240
TU184860 other upstream 196022 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 422181 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 481971 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 487741 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 534863 22083717 ~ 22084944 (-) True G147108

Expression Profile