RNA id: AMCG00005336



Basic Information


Item Value
RNA id AMCG00005336
length 990
RNA type mRNA
GC content 0.63
exon number 9
gene id AMCG00005336
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21722580 ~ 21727870 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTACCTGTCAGACCTGACATACATCGACTCAGCCTACCCCTCCACCGGCAGCATCATGGATAATGAGCCGCGCTCCAACCTCATGAACAACATCCTGCGCATCATCTCCGACCTGCAGCGCTCCTGCCAGTACGACATCCCAGTCCTGCCTCACATCCAGAAGTATCTGAACTCCATGAGCTACATCGACGAGCTGCAGAAGTTCGTGGAGGACGACAACTACAAGCAGTCCCTGAAGATCGAGCCGGGCAGCAGCACGCCGCGCTCCACCGCCTCCCGGGAGGACCTCGAGGGCCCAGACGCGGCCGCCTCGCCTCAGTGTGGCCGCCGGACAGCAGCAGAAGGGGCCCTGGCCAAGGTGCCGCCCACCCCCCCGTCGCCCAGGAACCTCATCCCGTACGGACACAGGAAGTGCCAGAGTCTGGGATACAATTTCATCCACAAGATGAACACGGCGGAGTTTAAGAGCGCTACCTTCCCGAACGTGGGTTCGAGGCACCTGCTGGACGACAGTGTGCTGGAGAGCCACACCCCCTCGCGTGGCCAGGCCGAGAGCTCCACACTGTCCAGCGGCATCTCGCTGGGGAGCAGTGAGGGCTCGGAGCTGAGCGAGGAGATGTCCTGGCCGGCGTTCGAGAGGAGCCGTTTCTATCACTCCCTGGGGCCCGTAACCAGGGTGGGCCGCATTCCCCACCGAGGAACCGTGAAGCCCAACAGCTCAGCGGAGTCGGAGGAGCTGGCGGTGCACCTGTACCCCGGCACGGTGACGGTGCAGGGCGTGCTGCGCCGCAAGACACTGATGAAGGAGGGGAAGAAGCCCACGGTGAGACCGGGGACCAGGGAGGGGagagagagagggggagagcgagagggagaaggaggacCACGATTCACCTGCTGCGCCGAGCTGAGCCAccggagagaggaggaggaggaagaagaggaagaggaccGGAGCATGGAGCAGACAGCAGACGACAATCACTAA

Function


GO: NA

KEGG:

id description
K24023 RALGPS; Ras-specific guanine nucleotide-releasing factor RalGPS

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU184834 lncRNA upstream 9797 21710357 ~ 21712783 (+) True G146915
TU184706 lncRNA upstream 323609 21398676 ~ 21398971 (+) True G146815
TU184664 lncRNA upstream 393678 21326532 ~ 21328902 (+) True G146782
TU184620 lncRNA upstream 657672 21063973 ~ 21064908 (+) True G146749
TU184569 lncRNA upstream 855174 20867206 ~ 20867406 (+) True G146703
TU184849 lncRNA downstream 17009 21744879 ~ 21745451 (+) True G146928
TU184983 lncRNA downstream 220216 21948086 ~ 21948618 (+) True G147022
TU184985 lncRNA downstream 222458 21950328 ~ 21950587 (+) True G147024
TU184988 lncRNA downstream 228731 21956601 ~ 21957045 (+) True G147027
TU185037 lncRNA downstream 353774 22081644 ~ 22087344 (+) True G147066
AMCG00005339 mRNA upstream 14186 21707342 ~ 21708394 (+) True AMCG00005339
AMCG00005340 mRNA upstream 18062 21703179 ~ 21704518 (+) False AMCG00005340
AMCG00005322 mRNA upstream 43477 21677587 ~ 21679103 (+) True AMCG00005322
AMCG00005317 mRNA upstream 55690 21662349 ~ 21666890 (+) True AMCG00005317
AMCG00005316 mRNA upstream 69792 21641391 ~ 21652788 (+) True AMCG00005316
AMCG00005337 mRNA downstream 5511 21733381 ~ 21737650 (+) True AMCG00005337
AMCG00005338 mRNA downstream 9814 21737684 ~ 21740828 (+) True AMCG00005338
AMCG00005335 mRNA downstream 28317 21756187 ~ 21757882 (+) True AMCG00005335
AMCG00005344 mRNA downstream 145157 21873027 ~ 21878534 (+) True AMCG00005344
AMCG00005345 mRNA downstream 155329 21883199 ~ 21887568 (+) True AMCG00005345
TU184830 other upstream 18186 21680708 ~ 21704394 (+) True AMCG00005340
TU184762 other upstream 150259 21570530 ~ 21572321 (+) True AMCG00005329
TU184679 other upstream 381868 21337432 ~ 21340712 (+) True G146790
TU184526 other upstream 919400 20797458 ~ 20803180 (+) False AMCG00005280
TU184446 other upstream 1020176 20699486 ~ 20702404 (+) True AMCG00005286
TU184875 other downstream 83862 21811732 ~ 21848136 (+) True G146952
TU184903 other downstream 157400 21885270 ~ 21887445 (+) False AMCG00005345
TU184980 other downstream 217688 21945558 ~ 21947991 (+) True G147021
TU184986 other downstream 224699 21952569 ~ 21952882 (+) True G147025
TU184992 other downstream 229570 21957440 ~ 21984144 (+) True G147029

Expression Profile