RNA id: TU184830



Basic Information


Item Value
RNA id TU184830
length 631
RNA type TUCP
GC content 0.64
exon number 6
gene id AMCG00005340
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21680708 ~ 21704518 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGAGAGACCGCGGGACGCAGCCGAGCCGCCGCCGCTGCAGCGACACCGTCTCCAGCCACAGCGGGCCAGCGACACCGGGACACCGGGACCGGGCTGGGACACACGCCGGGAATACAGCGCCGCGATCAGCCCCCGCATCGGCCGCCCTCCGGAGctcCTGAGTGGCACACGGGCAAAGCGTCGGCCTGCGAGGCTGACATGCACGTCTGACCAGCGGCAGagcCTTGGCTGGGTGAGCTGCCGGACCATGAGGTAACTGCTGCCTGGTGCCGAGCTGTGAGGAGACGGATGCTATGGGAATTATGGACCCCCCCAATGGGCAGTCCAACGTCGCCAGCCGTGCTGCCACTGCGTCGGAGAAGAGCAGCAGCTCCGAGTCGCTCAGTGACAAGGGCTCCTGTGAGCTGAAGAAGAGTTTCGATGCCGTGGTTTTCGACGTCCTGAAGGTCACGCCTGAGGAGTTTGCCGGTCAGATCACACTGATGGACGCTCCTGTGTTTAAATCCATTCAGCCTGAGgAGCTGTCTAGCTGCGGCTGGAACAAGAAGGAGAAACACAGCTCGGCGCCCAACGCAGTCGAATTCACGCGCAGATTCAACCAGGTGAGTGTGGGCCAGGCCGGCGCTGGTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU184706 lncRNA upstream 281737 21398676 ~ 21398971 (+) True G146815
TU184664 lncRNA upstream 351806 21326532 ~ 21328902 (+) True G146782
TU184620 lncRNA upstream 615800 21063973 ~ 21064908 (+) True G146749
TU184569 lncRNA upstream 813302 20867206 ~ 20867406 (+) True G146703
TU184567 lncRNA upstream 824790 20855711 ~ 20855918 (+) True G146701
TU184834 lncRNA downstream 5963 21710357 ~ 21712783 (+) True G146915
TU184849 lncRNA downstream 40485 21744879 ~ 21745451 (+) True G146928
TU184983 lncRNA downstream 243692 21948086 ~ 21948618 (+) True G147022
TU184985 lncRNA downstream 245934 21950328 ~ 21950587 (+) True G147024
TU184988 lncRNA downstream 252207 21956601 ~ 21957045 (+) True G147027
AMCG00005322 mRNA upstream 1605 21677587 ~ 21679103 (+) True AMCG00005322
AMCG00005317 mRNA upstream 13818 21662349 ~ 21666890 (+) True AMCG00005317
AMCG00005316 mRNA upstream 27920 21641391 ~ 21652788 (+) True AMCG00005316
AMCG00005315 mRNA upstream 45541 21630980 ~ 21635167 (+) True AMCG00005315
AMCG00005314 mRNA upstream 56102 21622078 ~ 21624606 (+) True AMCG00005314
AMCG00005339 mRNA downstream 2948 21707342 ~ 21708394 (+) True AMCG00005339
AMCG00005336 mRNA downstream 18186 21722580 ~ 21727870 (+) True AMCG00005336
AMCG00005337 mRNA downstream 28987 21733381 ~ 21737650 (+) True AMCG00005337
AMCG00005338 mRNA downstream 33290 21737684 ~ 21740828 (+) True AMCG00005338
AMCG00005335 mRNA downstream 51793 21756187 ~ 21757882 (+) True AMCG00005335
TU184762 other upstream 108387 21570530 ~ 21572321 (+) True AMCG00005329
TU184679 other upstream 339996 21337432 ~ 21340712 (+) True G146790
TU184526 other upstream 877528 20797458 ~ 20803180 (+) False AMCG00005280
TU184446 other upstream 978304 20699486 ~ 20702404 (+) True AMCG00005286
TU184436 other upstream 1010539 20661926 ~ 20670169 (+) True G146596
TU184875 other downstream 107338 21811732 ~ 21848136 (+) True G146952
TU184903 other downstream 180876 21885270 ~ 21887445 (+) False AMCG00005345
TU184980 other downstream 241164 21945558 ~ 21947991 (+) True G147021
TU184986 other downstream 248175 21952569 ~ 21952882 (+) True G147025
TU184992 other downstream 253046 21957440 ~ 21984144 (+) True G147029

Expression Profile