RNA id: AMCG00005341


Basic Information

Item Value
RNA id AMCG00005341
length 2414
RNA type mRNA
GC content 0.63
exon number 5
gene id AMCG00005341
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21710505 ~ 21717461 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGGCGGCGCTGTGGAGCGTGTGtgcggtgctgtgtgtgtgggccTGGGGGCGGGGCCGGGGGGCGGCGGTGGCTCCGGGGCGCAGGAGGAGCCCGAGGGCGGCGCCAGACAATGGCAGGAAGTGCGCCTATACCTTCCTTGTGCCGGAGCAGAAGGTCACCGGGCCCATCTGCGCTCACAGCACCGGACCCGAGCCAGCCCGCGACCGCGTGACCCGCATGGACCTGGCGGACGTGCGGGACGTGCTGTCCAAGCAGCGGCGCGAGATCGAGACGCTGCAGCTGGTGGTAGACGTGGACGGCAACATGGTGAACGAGATGAAGCTTCTGCGCAAGGAGAGCCGCAACATGAACTCGCGCGTCACGCAGCTCTACATGCAGCTGCTGCACGAGATCATCCGCAAAAGGGACAACTCCCTGGAGATTGCGCAGCTGGAGAGCCGCATCCTCAACGCCACATCCGAGACGCTGCGCCTGGCCGGCCGCTACAAGGAGCTGGAGCTGCGCTACGCCGCGCTGGCTGGCCTGGTCAACAACCAGTCGGTGCTGATCACACAGCTGGAGGAGCAGTGCCTGCGTGCATTCAGCCGCCAGGACCTGCCCGCCATGCCGCCGCTGGTGCAGGTGGTGCCGCAAAACATCCCCATCAACAACCGCTACGTTGGCAGCAACGAGATCCCCCGAGAGCACAACCGCGCCTTTCCCCGCGACCCCGGCCTGCGCCCGCCGCCCACCGCCAACCCCCTGGGGCTCCTGCCTGCGCCGCAGGGCACGCTCACCACCGACGggCCGTTCCGGGACTGTCTGCAGGTGCGCCAGGCAGGCCACGCTGTCAGTGGGATGTACCTGCTAAAGCCAGGGGGCAGCGAGGGACTCATGCAGAAAGGGTTCGGGAACATCGACAGCGAATACTGGCTGGGCCTGGAGAACATCTTCAACCTGGCCAGCCAGCGGGACTACCGGCTGCTGGTGGAGATGGAGGACTGGGTGGGGAAGAAGGTTTACGCCGAGTACAGCAGCTTCCGCCTGGAGCCTGAGAGCGAGTTCTTCCGGCTGCGGCTGGGCACCTACCAGGGCAACGCCGGCGACTCACTCAGCAGCCACAACGGCAAGCAGTTCACCACCCTGGACCGCGACAAGGACGCCTTCGCAGGTAACTGCGCCCATTTCCACAAGGGCGGCTGGTGGTACAACGCCTGCGGACAGACTAACCTGAACGGGGTTTGGTACAGCGGGGGGGTGTACCGCAGCAAGTTCCAGGACGGCATCTTCTGGGCCGACTACGGGGGTGGATTCTACTCTTTGAAGGCGGTGCAGATGATGATCCGGCCCATAGACTGAGGAcaggccgggccgggccgggccggacTCACCCACTGCTTCTACCCCACCCTGCCCTGACCCCACCCCACTCACCCCCGACCCCCTCTCTCCACATTCACGGTGTATACAGTGGAGACCGCACTGgcctgtgcctgtgtgtgcagtgtgtcataTGTGTGCcgtgtgttgtgtgcagtgtgtgtgtttatggatGACAGTTCTTGGGATGCATCGCCTGGGCCGCACCTTCCTCACCTGCCTCGCCCtccaccctcctctccctctaGTCCTTCCAGAGGACTGGGAAGGAGGACAGTGTCCAGACAGAAAGCAGctcacagcacagcagtgttAGAGAGAGACGCCCCCCAGCAGGTACAGCAGCAGGCGGCACACTACCCTCAGCACCACCACCGTCTGTGCGGCTCATTGATTCCGGGAGAAAAAGCTAGGGATGCTTCTCCACACCCGTCACGGGCCAGAGAAGCGAGAGAACTGCTGGGCCCAGTGCACCGTGGGAGCtgcaggagggagggaaggacaCTGAGCTCTGCAGAGCAGCTCACACGGACACGGACCGCAACCCAGCGCCCCGGAGGGACcctgacacacgcacacagcccAGTGCCCTGGAGAGACCCcgacacgtgcacacacacacctgcacagaAGTGCGCACACAGCCCAGTGCCCGGAAGCCGCCCACTCAGTGCAGAGGGATGCAGTGACCGCTCTGTCCGTGTGCTCGGGGGGGGCGGCCTAGCTTCGGCAAAACCCCCTATACCTACCCCCGTCCCCCCAACCTCCCGCCATTATTTATCGCCTTATTTAAATGGGATATAGTCTTGTGTTTCTGTAAGTTCTGTCATTGGGTTTCCAGGCCCAGAGCCTGTTCCACTCCAGAACCCCTTCTGTCAGGACAGACACTCGTGACAGGAGATGGAGCTGAGGCCCAACTCTGCCAACCTACTCCTACTACCACTAGATACCAAAATAAACCTATTTTTAAATACCCCCTGCTCCTCGGACTCTTTATTCCCTGCTCTCGCTGCCCCAGTctgcagcccccccaccccggtgAGATCTTC

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184798 lncRNA downstream 103970 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 149044 21560049 ~ 21561461 (-) True G146857
TU184738 lncRNA downstream 222794 21485949 ~ 21487711 (-) True AMCG00005333
TU184704 lncRNA downstream 328936 21381306 ~ 21381569 (-) True G146813
TU184568 lncRNA downstream 852703 20857600 ~ 20857802 (-) True G146702
TU184859 lncRNA upstream 28083 21745544 ~ 21745808 (-) False AMCG00005343
TU184873 lncRNA upstream 89519 21806980 ~ 21807306 (-) True G146951
TU185082 lncRNA upstream 264597 21982058 ~ 21982521 (-) False AMCG00005363
TU185126 lncRNA upstream 414805 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 511738 22229199 ~ 22229991 (-) True G147156
AMCG00005323 mRNA downstream 30022 21677408 ~ 21680483 (-) True AMCG00005323
AMCG00005320 mRNA downstream 34669 21668543 ~ 21675836 (-) True AMCG00005320
AMCG00005321 mRNA downstream 42237 21668089 ~ 21668268 (-) True AMCG00005321
AMCG00005319 mRNA downstream 48582 21660508 ~ 21661923 (-) True AMCG00005319
AMCG00005318 mRNA downstream 79391 21619224 ~ 21631114 (-) True AMCG00005318
AMCG00005342 mRNA upstream 23058 21740519 ~ 21743898 (-) True AMCG00005342
AMCG00005343 mRNA upstream 28113 21745574 ~ 21747798 (-) True AMCG00005343
AMCG00005347 mRNA upstream 121365 21838826 ~ 21841316 (-) True AMCG00005347
AMCG00005346 mRNA upstream 127583 21845044 ~ 21861431 (-) True AMCG00005346
AMCG00005355 mRNA upstream 173853 21891314 ~ 21910286 (-) True AMCG00005355
TU184470 other downstream 1099862 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1430759 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1686998 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 1686998 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 1949059 19758232 ~ 19761446 (-) True AMCG00005240
TU184860 other upstream 27415 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 253574 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 313364 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 319134 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 366256 22083717 ~ 22084944 (-) True G147108

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031706 True 1869 mRNA 0.59 6 NC_007113.7 97692 ~ 103388 (-)
grasscarp (Ctenopharyngodon idella) CI01000237_00046108_00051386.mRNA True 1747 mRNA 0.55 5 CI01000237 46108 ~ 51604 (+)