RNA id: AMCG00005342


Basic Information

Item Value
RNA id AMCG00005342
length 489
RNA type mRNA
GC content 0.61
exon number 6
gene id AMCG00005342
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21740519 ~ 21743898 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTATTGACGTCGCAGGCCACCCGTTTACGGCACCGCCGGCGAGGCCGGTTCGGCCCTTTCACCCGAGTGGCTCGCCGCGGGACTGCCGTGATATTTGAGTACTGGGCCAACCTGAAGCTGTGGTTCAAGCAGAAGATCAGCAAAGAAGAGTTTGACAGCGAGGCGCGCCGGCTCCTCACGCACGACAATGTGCACGTCCACAATGACTTCCTGCTGGCCATCCTCACCCGTTGTCAGATCATGGTCTCCACTCCAGAAGGTGCCAGCTCGCTGCCCTCCAAGCCCGGGAAACCCAAAGGGAAGAAGAAGTTCTCCTCTGTCAGGCAGAAGTTTGACGATGAGCATGCTGGCGCCGCCGTCGTCCTGGAAGCTCTCGTAGTGGTGCCGGTCCGCGTTGCCGATCAGTCGAACACGGCTGTGTCCACCACGTCCAGCAGCCGCGGCCCGGCGTCATACGGCGGCATCTTCTTCACCGCCTCGCAGTAG

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process

KEGG:

id description
ko03030 DNA replication
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184798 lncRNA downstream 133984 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 179058 21560049 ~ 21561461 (-) True G146857
TU184738 lncRNA downstream 252808 21485949 ~ 21487711 (-) True AMCG00005333
TU184704 lncRNA downstream 358950 21381306 ~ 21381569 (-) True G146813
TU184568 lncRNA downstream 882717 20857600 ~ 20857802 (-) True G146702
TU184859 lncRNA upstream 1646 21745544 ~ 21745808 (-) False AMCG00005343
TU184873 lncRNA upstream 63082 21806980 ~ 21807306 (-) True G146951
TU185082 lncRNA upstream 238160 21982058 ~ 21982521 (-) False AMCG00005363
TU185126 lncRNA upstream 388368 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 485301 22229199 ~ 22229991 (-) True G147156
AMCG00005341 mRNA downstream 23058 21710505 ~ 21717461 (-) True AMCG00005341
AMCG00005323 mRNA downstream 60036 21677408 ~ 21680483 (-) True AMCG00005323
AMCG00005320 mRNA downstream 64683 21668543 ~ 21675836 (-) True AMCG00005320
AMCG00005321 mRNA downstream 72251 21668089 ~ 21668268 (-) True AMCG00005321
AMCG00005319 mRNA downstream 78596 21660508 ~ 21661923 (-) True AMCG00005319
AMCG00005343 mRNA upstream 1676 21745574 ~ 21747798 (-) True AMCG00005343
AMCG00005347 mRNA upstream 94928 21838826 ~ 21841316 (-) True AMCG00005347
AMCG00005346 mRNA upstream 101146 21845044 ~ 21861431 (-) True AMCG00005346
AMCG00005355 mRNA upstream 147416 21891314 ~ 21910286 (-) True AMCG00005355
AMCG00005354 mRNA upstream 167981 21911879 ~ 21916299 (-) True AMCG00005354
TU184470 other downstream 1129876 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1460773 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1717012 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 1717012 20020710 ~ 20023507 (-) False AMCG00005256
TU184128 other downstream 1979073 19758232 ~ 19761446 (-) True AMCG00005240
TU184860 other upstream 978 21744876 ~ 21745453 (-) True G146938
TU185079 other upstream 227137 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 286927 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 292697 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 339819 22083717 ~ 22084944 (-) True G147108

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000237_00035463_00043324.mRNA True 1254 mRNA 0.55 6 CI01000237 35090 ~ 43324 (-)