RNA id: AMCG00005343


Basic Information

Item Value
RNA id AMCG00005343
length 429
RNA type mRNA
GC content 0.66
exon number 3
gene id AMCG00005343
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21745544 ~ 21747798 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGACCTTCCTGGCAGCTTTACAGGTGGTGGCTGTGGTGACATTATGCAGAGGAGGCTGCTGTGGGGGGGAGGTGAGGAGGCAGGCGATGGGGAGGGAGGGCAGCGTTGTGGTTCCTGTGGTTTTTACACAACGCATCCCCCagcgagagagaggaaggggcgGTACAGGCCGGGTTCCCACGGCCAGAGCCGTGTGCCGGAGCGCATGGATGGACATactGACCCTGCTGCGGGGGGGCGCTCTGAGCTCGGCGCTGCGCACGGCCACCAGCCACGACCCCCTGTTCCCGGTGCTGACTGAGGCGCACCTGGCCGCGCTGGACCGGCGGCTGGACAGCGTTCTGGCCGCAGTGAAGCAGTGCATCGACACCCAGGGGCCAGACAGCACCCTCATCGAGGACCGCATCAACCTGCAGCACTCCTAG

Function

GO:

id name namespace
GO:0030166 proteoglycan biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0048701 embryonic cranial skeleton morphogenesis biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184798 lncRNA downstream 139039 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 184113 21560049 ~ 21561461 (-) True G146857
TU184738 lncRNA downstream 257863 21485949 ~ 21487711 (-) True AMCG00005333
TU184704 lncRNA downstream 364005 21381306 ~ 21381569 (-) True G146813
TU184568 lncRNA downstream 887772 20857600 ~ 20857802 (-) True G146702
TU184873 lncRNA upstream 59182 21806980 ~ 21807306 (-) True G146951
TU185082 lncRNA upstream 234260 21982058 ~ 21982521 (-) False AMCG00005363
TU185126 lncRNA upstream 384468 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 481401 22229199 ~ 22229991 (-) True G147156
TU185197 lncRNA upstream 675191 22422989 ~ 22423230 (-) True G147184
AMCG00005342 mRNA downstream 1676 21740519 ~ 21743898 (-) True AMCG00005342
AMCG00005341 mRNA downstream 28113 21710505 ~ 21717461 (-) True AMCG00005341
AMCG00005323 mRNA downstream 65091 21677408 ~ 21680483 (-) True AMCG00005323
AMCG00005320 mRNA downstream 69738 21668543 ~ 21675836 (-) True AMCG00005320
AMCG00005321 mRNA downstream 77306 21668089 ~ 21668268 (-) True AMCG00005321
AMCG00005347 mRNA upstream 91028 21838826 ~ 21841316 (-) True AMCG00005347
AMCG00005346 mRNA upstream 97246 21845044 ~ 21861431 (-) True AMCG00005346
AMCG00005355 mRNA upstream 143516 21891314 ~ 21910286 (-) True AMCG00005355
AMCG00005354 mRNA upstream 164081 21911879 ~ 21916299 (-) True AMCG00005354
AMCG00005353 mRNA upstream 189650 21937448 ~ 21956941 (-) True AMCG00005353
TU184860 other downstream 121 21744876 ~ 21745453 (-) True G146938
TU184470 other downstream 1134931 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1465828 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1722067 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 1722067 20020710 ~ 20023507 (-) False AMCG00005256
TU185079 other upstream 223237 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 283027 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 288797 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 335919 22083717 ~ 22084944 (-) True G147108
TU185123 other upstream 380109 22127907 ~ 22130549 (-) True G147121

Expression Profile