RNA id: TU184859


Basic Information

Item Value
RNA id TU184859
length 265
lncRNA type sense_over
GC content 0.68
exon number 1
gene id AMCG00005343
representative False

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21745544 ~ 21747798 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGCTGCGCgtctccacctggaacagactGACCCTGCTGCGGGGGGGCGCTCTGAGCTCGGCGCTGCGCACGGCCACCAGCCACGACCCCCTGTTCCCGGTGCTGACTGAGGCGCACCTGGCCGCGCTGGACCGGCGGCTGGACAGCGTTCTGGCCGCAGTGAAGCAGTGCATCGACACCCAGGGGCCAGACAGCACCCTCATCGAGGACCGCATCAACCTGCAGCACTCCTAGAGCTggagagtgggagggagaaggagagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184798 lncRNA downstream 139009 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 184083 21560049 ~ 21561461 (-) True G146857
TU184738 lncRNA downstream 257833 21485949 ~ 21487711 (-) True AMCG00005333
TU184704 lncRNA downstream 363975 21381306 ~ 21381569 (-) True G146813
TU184568 lncRNA downstream 887742 20857600 ~ 20857802 (-) True G146702
TU184873 lncRNA upstream 61172 21806980 ~ 21807306 (-) True G146951
TU185082 lncRNA upstream 236250 21982058 ~ 21982521 (-) False AMCG00005363
TU185126 lncRNA upstream 386458 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 483391 22229199 ~ 22229991 (-) True G147156
TU185197 lncRNA upstream 677181 22422989 ~ 22423230 (-) True G147184
AMCG00005342 mRNA downstream 1646 21740519 ~ 21743898 (-) True AMCG00005342
AMCG00005341 mRNA downstream 28083 21710505 ~ 21717461 (-) True AMCG00005341
AMCG00005323 mRNA downstream 65061 21677408 ~ 21680483 (-) True AMCG00005323
AMCG00005320 mRNA downstream 69708 21668543 ~ 21675836 (-) True AMCG00005320
AMCG00005321 mRNA downstream 77276 21668089 ~ 21668268 (-) True AMCG00005321
AMCG00005347 mRNA upstream 93018 21838826 ~ 21841316 (-) True AMCG00005347
AMCG00005346 mRNA upstream 99236 21845044 ~ 21861431 (-) True AMCG00005346
AMCG00005355 mRNA upstream 145506 21891314 ~ 21910286 (-) True AMCG00005355
AMCG00005354 mRNA upstream 166071 21911879 ~ 21916299 (-) True AMCG00005354
AMCG00005353 mRNA upstream 191640 21937448 ~ 21956941 (-) True AMCG00005353
TU184860 other downstream 91 21744876 ~ 21745453 (-) True G146938
TU184470 other downstream 1134901 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1465798 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1722037 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other downstream 1722037 20020710 ~ 20023507 (-) False AMCG00005256
TU185079 other upstream 225227 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 285017 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 290787 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 337909 22083717 ~ 22084944 (-) True G147108
TU185123 other upstream 382099 22127907 ~ 22130549 (-) True G147121

Expression Profile