RNA id: AMCG00005346


Basic Information

Item Value
RNA id AMCG00005346
length 6660
RNA type mRNA
GC content 0.63
exon number 21
gene id AMCG00005346
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21845044 ~ 21861431 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGTGCGACCCCACGGCGATGGCAGAGGCTGCTGAGCTGGAGAGGCCTGTGCTAACCcgtctcctccctccctctccccgcAGCTCCCCCAGTCGTCATGTGTGTTGTTCGGAAGAGAGCCCTGCGGGTGCAGTGCAGCCCGCACAGGACAGCGGCCCTCCGGcgcagcaggaggaggaagcTGAGCAACCGGGTGAAGGGCAGCGGGCACCGCACAGCCAGTCCTCCTATGACGTGGGCCTGGAGGCAGAGCGGGTCCAGCGAGAGGAGGCGCTGACGCGGGACGTTGTGAGGGACCAGGTGCTCGAGCAGATTGTGACAGCAGATGACCCCAGTGTGTCGGCTGAGCCAGAGCCAGAACCAATACCAGAACCAATACCAGAGCCAGTACCCGAGCCCCAGCCCGAGCCCCAGTCCGAGCCCCAGCCGTCCCCCATCCTGGACCAGATGCCCTCCACTGACGACTCCTCCAGTGCCACCAACGCTGAGAAGATCGCCAGCACGCCTACCTCACACACTCCTCCGGCCATGCAGCCCAGCGCAATAGCGGTCCCCAGTGCCGATTCCCCTGTAGGCAGCTCTATTGATGCCGAGCAGTCCGCTGGTGACTGTGAGGCTGGAGGGACCCTTGTGGCGTCCCCTCCCAGCGAGCCCCCTCCCTTTGGCAGCGCACTCACCAGTCTGGACGTGGGGCACATCGAGAACACCTCCAGCACCCACGGCCGGGCGAAGGTCACCAGCACCGACCTGGAGCCCACACTCACCCCGGTGGGCCAGGACAGTGCCGGGCAGGAGACGGGCGGCAATGCCTCCCACGGACTGGAGGGACAGaAAGTGGACCCCCACGGTGTCAAAGAGGTGGACCCCTCCGCCGTGGTGCCCGGCAAGGACCCCGGAGACATCCCCACCTTTGACGAGTGGAAGAAGAAGGTGATGGAGGTGGAGAAGGAAAAGAGCCAGTCCATGCACCCCTCCTCCAACGGCAGCCCCCACGTGGTGAAGAAGGTGCAGAAGAACTTCAATAACTACGCCTCGGTGGAGTGCGGTGCCAAAATCCTCGCCGCCAACACAGAGGCCAAGAGCACCTCCGCCATCCTCATGGAGAACATGGACCTGTACATGCTCAACCCCTGTAGCAACAAGATCTGGTTCGTCATCGAGCTCTGCGAACCCATCCAGGTGAAGCAGCTGGACATCGCCAACTTCGAGCTCTTCTCCTCCACACCCAAGGACTTCCTGGTGTCCATCAGCGACAGGTACCCCACCAATAAGTGGATCAAGCTGGGCACCTTCCATGCCCGGGAGGAGCGCACGGTGCAGAGCTTCCCGCTGGACGAGCAGCTGTACGCCAAATACGTCAAGATGTTCATCAAGTACATAAAGGTTAGCATTCTCCTTACAGACGTTTTTGGATGCACTGTGAGGGGTGGGTGTGGTTTGGAGGGGTGGGTGCTGCTGgtgctggggggtgggggggcttttGTGGTGGTGCTCTTTAATGCATGGCAGAAATGCAGTCTGCTCCCTGAGCAGGACCCCCCAAAAACTGATTGGGACAGAAGAGAGAGGCTTGTGCAAATCCCGCCTTGCTGCAGTGGCCCCTGTGAGGGCGTATGGGGCCCCGCACGTCCAGCCTTGTGCTCCGTCTCTTACCCGTCCTCTCCTCTGCAGGTGGAGCTGCTGTCGCATTTCGGATCTGAACACTTCTGCCCCCTGAGTCTCATCAGggtgTTTGGCACCAGCATGGTGGAGGAGTACGAGGAGATCGCTGAGTCGCAGTACGCCTCGGAACGCCTCGAGTACCTGGATGAAGACTACGATTACCCACCCGGGTACGTGCCCCCCGAAGACAAGGCCTCCAAGAACCTGCTGGGCTCGGCCACCAATGCCATCCTGAACATGGTTAACATAGCGGCCAACATGCTGGGGGCCAAGTCCGAGCTGGAGGAAGCGGCGAAGAGGGAAGCCAACGCCTCGGCCGCAGCTGGGAACGGGACAGAGATGCCCCTGGTGATGCAGCCCCCCACCGACTCAGCTCCCGTGCTGGAGGCTGGCGAGGCTGTCCATCCCTCGCCGGTGGAGGTGGAGGGAGAGCCGACCCCCGAGCCGGAGCCCCCCGCGGCTGCGCAGGTGCCAGAGGAGAGCCTGATCGTCACGCTGGtgcaagaggaggaggaggagcccaGCCCATCCACCGTCACGCTGCTGGAagccgaggaggaggaggccgaTGCCGGGGGGCCGGATCGCCGTCGGAGCGAGAGCCTCACGTACTGCGGGGGGCCGCTCGCCCAGTCCTGCGCTGCCAGCTTTGCCGAGGTGGTCCGGCAGTGGTGCTCCGCCGATGCCGCCCTGCAGAGGCAGCGCAGCGGGGTCCCAGTCCGGCGAGAGACGTGGCTGGGCCCCCGCATCTCCAAGCACACCCCCCTGCTGCCCCCCTACACACAGACCCTGCCCACTGCCACGCTgccgcccccccccacagagCGCCCCCCCAGCACGGAGGAGCAGCCCCCCGCCATCTCCCTGGACCCAAACCTGGCCGCACCGCCCTCCCGCCCCGTGGAGCCCATCCTGCTGGAGCCCAGCCAGTCCTCCTTGCTGGCCCAGCCCGGCCCCTCCAGCCTGGACTCGGCCCAGCTGCTCCCCACGGAGGACATCCCCGAACCCCCCACCGGAGAGCTGCCACAGCTGGGCCCACCGGCGCCTGACGGCACCCCCGAGACAGAGCCCGTGcccagcagcaacagcagcgcCACCGTGCAGGAGACCCCTCCCGGGCCCGAGACCCCCGCCGCCGCCCCACAGGAGACCCCCAGCACCGGTCCGCCCGAACTCCCAGCTCCCACCGCCACGCAGCTGGCGGAGACACCCGCCTCCCTCGAGCCCCCGCTCCCCCCCGTGGAGACGGACCCCGGCCAGGCCCCCCCGCCTGACGAGCTGCCACCCAAGCCCACCGATGCCCCCGAGACCCCCGAGCCGCCCGCCGAGGAGCCCCCCTCCCCCGAGGACCTGCTGCTCTCAGCGCCCGTGGGCAACGGCCAGCTCCAGCGCAGTGCCACCGACTTCTACGCCGAGCTGCAGAACTCCTCGGACCTCGGCTACGGCAACGGCAACCAGGTGCACGGCTCCAACCAGAAGGAGTCGGTGTTCATGAGGCTCAACAACCGCATCAAGGCCCTGGAGATGAACATGTCCCTGAGCAGCCGCTACCTGGAGGAGCTTAGCCAGAGGTACCGCAAGCAGATGGAGGAGATGCAGAGGGCCTTCAACAAGACCATCATCAAGCTGCAGAACACGTCACGCATCGCCGAGGAGCAGGACCAGCGGCAGACCGAGTCCATCCAGCTGCTGCAGAGCCAGCTGGAGAACGTGTCTCAGCTCGTCCTTAACCTGTCGGCCACCGTCGGCCAGCTGCAGAGAGAGCGTTGCTGTGGGGCCGCCCCCCCGCACCGAGAGCCCATCTCCCCCATCCCCAAGAGCAACCACTACCCCAGCCCCAAGAGGTGTTTCTCCTCCTACGACGACATGAGCCTGAAGCGCCGGGTCTCCTGCCCGCTGAAGAAGCGCTGCAAGATGAAGGCCGAGAAGACGGAGACCCTGCGGCCCGGCGCCGGCGCTCCAACAGTAGCTAACGGCGGCCCCCGCTGCCACGGCGGCTTCCTGCCGTCGGGGGAGGTGTGCACGTCTTCCTACAAGGGCCCCCCGTCCGAGGGCAGCAGTGAGGGCTCGTCCCAGTCCGACGAGTCCCTGTTCTGCGGGATCTCGGCCTGCACCCGCCTCTGCAACGGCCAGCCGCCCCCCCGCACACGGACCGAGAAGCGGGCGCTGAAACGCCGGCGCTCCAAGATGGCGGAGCAGGGCCGGGGCATGGAGGAGCTGCTGCGGGGCCGTGCCGTGGCCAGCCTGCAGGACATGATCGCGGGCAGCAAGGACATCAGCGTGGGCACGTTCGGGGGCACGGCCGTGTCGGGGCACGTGTGACTCCAACCCCCAGGGCCTGTACGCAGACCCCCCCCTAGGGCTGGGCGTCTCCTCCTCGGCGCCCCTCGTCCTCCGGCCTCTCCTCGTTCATGTGCCTTGTCTGTGCAGAGCTTGTGGTCTGAAAACgcccaaaacaaacacaaaaccttttacagagagagaagaaaaacgGTGCAATGGAAGGAGTGGGTTCACTGGGGGACCCTGTGCTGCCCGGTGGGGGGGGCGCGCGGCGGACCACACTCCATCCCGCCCCTGGTTTTACAGAGGCAGGCGCCCCGGGCCGGGTCGGGACGGGCTGGACGGGAGGCCGAGGACAGGCGTGCTCCTCCTGGACGTTTTAATTTCCTTCTGCGTTCATTGTTCTTTCGCTCAGTTTGTCCTCGTTCGTGTTTTCACACTACAGCCGTGGGAGTCCAGGGACCAGAGCCTCTAGTCTCGCagtgcaccccccccccccaccaaagaGCACTGTGACCCGCAGGCCCAGAGAGCCTCCGGGCCGTGACTACACTGCTTCTttccactaatttatttttcattattagtacgacttgtttttttgtattattaatatagttTAACAGTCAGGCTGGGGGGGCTTGTGGGTCCCTGTTGCCGCTTGGTTGGTTTTCTTCCTGCTTTGTGGTCCAAGTCTGGGTGTCCtccccctgtctgtctgtgactgtgtggACCGCACCGTCTGGCTCCCTTTCAGTGTTCTTTGTATGATTTCTGTAACCGCAagctgggtggggggggagaaaacCAGGTACTTTATTTTACTGGAACAACACGCCACACGGATGGTGAATTCAGAACGGGTGGGTTTGACTAGTCTGAGGCGACGCTCCTGTGACATGGCTCTCCTCAGCCGGGCCGTGGGTCATCGGCGCTGTCCGGGTCCTTGCTCACAGCCGACCCTCTGGTCCCCGAGGGGCCGCAGGCCGGTGACGGACCCTCGTCTGCGCTCGGCTGCACGAAGGGGGTTTGTGCTCCGGGGCGGGAGCGGGGTGGGCTTTCCCTCTCGGCCGCAGAGCGCAGCGAGGAGCTCGAGTCCTGCCGGGCCGGGGACGGCTGTCTGCTGATCGCACCCCCGCAGGGTTGTGGGTTGGGTTCTCAAAACAAGGGATGACCTGGAAAGGTTCAGTCCTGAAATCCCTTCTGGATGATGAGTCAGGGTGTTTGAGGTCTTTAAACTTCTGTTTAGTGTCTTGTAGTGGAGCAGCGGTGCTGTCAAagggcccggcccggcccggtgGGGGTGTATGCTTTGGGAAGCGATCCGACCTGGGCAGAACCGATGATAGACTTGCAGGACAAAGATGCGACTGCATTCTGAACCcaccctgtgtgtgtcaggggccCTGCAGGGCCactgactgctgctgctgcatctaatttatttatttaattatttatttaaatactccCACAGACCTGCCTCTTGGCGGGGGGGGCGCGGCAGCAGAGCCTAACACACAGCGGCCTCCGCATTGGACATCTGGAAAACTGTGACCGTAATGAGCAGTGTGAGCAGAGGGacgtgtgtctgtgctgtgggtTGTGGCCGGGGGGGGACACACTGCTCTGGCCCCCTGCGTCTCCAGCTCCCCGTGACTCCCGCCTCTCTCCTGTAGAGACGCCTGTTCAGTATTTGGACATCTGTAAGGTTTTCTTCCTCCTCAGACAATCGTTTGTTGGACTGCTGTCCTTCcggtacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcggagCCTGCGGTTCCACACAGTCAGTCGGGGCTCCCTGTGGGGCCAGCGTGGCCCTCCCCCGAGACCAGGTGTTCGGTGGCCCTGTGCCCCCTATCCCTCTGCATTGTCCCCTATGCTCCCCACAGTAGACTGGCCAGTGTTTTAGTTGCATCAGCCTGATCATTCCCGTCGGCCCTGTGCCCCGCTCCGGAGGTTCTAGTCCCGTTGACTCGTCCGGTGTGGTTCTGACCCGTTTCGTCCCGGTGTCTGCAGTCTGATGCAGGCAGACCAAAAACTCtactttttatatgtatttttttatgcataAGCAATGCAGTCAGTGATGAAGACCCAGACCCGAGGCCCGATTCTAGTGTTGGGGGGGTCTGTGATGGTCTCTCCCGTTACAATGCCGGGGGGGTTCTGTCCCGCAGTGTTGCTGTATTTCCCTGTTCACTACTTGGGGGGGGTGTTGTGCACAGTGGTTTTGTGAAAGGTGCCTGACATGTTCGCAGTGGGGactggtgtttgtgtgtttaatcacCATGAGAGACCTCTGACAGGACAGGGATGTGACTGGGGGGGACAAggctgtgcgtgtgtgtgcaagtAAGTACGTGGGAGTTGTGCGTGCGTGTTGTGCGATCGTGAGATGGTGAATGTTTTTTAACCCGAATGTCTGGGGACGCTGTCCCGGCTGTGTGGCTGGTCGCCCTGCTGTGAAAGGGTTTCGGCTCAACTTGCACTCTTATCACTCCTCTTGCCTTCTgttttcccacaatgcaccgtGTGTGTCGAGCGCTCGTCTGCCAGGCGCCATGCTGCTCATCTTTGTCTGTGAGAGTGAGCTGCACAGTCCTCTGGAGCGCAGTGTCACTGCAGAGATGTAGTGCCATTAGAAACTGTgaatttctaaataaaatgaactttGTCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184873 lncRNA downstream 37738 21806980 ~ 21807306 (-) True G146951
TU184859 lncRNA downstream 99236 21745544 ~ 21745808 (-) False AMCG00005343
TU184798 lncRNA downstream 238509 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 283583 21560049 ~ 21561461 (-) True G146857
TU184738 lncRNA downstream 357333 21485949 ~ 21487711 (-) True AMCG00005333
TU185082 lncRNA upstream 120627 21982058 ~ 21982521 (-) False AMCG00005363
TU185126 lncRNA upstream 270835 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 367768 22229199 ~ 22229991 (-) True G147156
TU185197 lncRNA upstream 561558 22422989 ~ 22423230 (-) True G147184
TU185198 lncRNA upstream 564294 22425725 ~ 22426106 (-) True G147185
AMCG00005347 mRNA downstream 3728 21838826 ~ 21841316 (-) True AMCG00005347
AMCG00005343 mRNA downstream 97246 21745574 ~ 21747798 (-) True AMCG00005343
AMCG00005342 mRNA downstream 101146 21740519 ~ 21743898 (-) True AMCG00005342
AMCG00005341 mRNA downstream 127583 21710505 ~ 21717461 (-) True AMCG00005341
AMCG00005323 mRNA downstream 164561 21677408 ~ 21680483 (-) True AMCG00005323
AMCG00005355 mRNA upstream 29883 21891314 ~ 21910286 (-) True AMCG00005355
AMCG00005354 mRNA upstream 50448 21911879 ~ 21916299 (-) True AMCG00005354
AMCG00005353 mRNA upstream 76017 21937448 ~ 21956941 (-) True AMCG00005353
AMCG00005352 mRNA upstream 98163 21959594 ~ 21960501 (-) True AMCG00005352
AMCG00005363 mRNA upstream 109992 21971423 ~ 21972456 (-) False AMCG00005363
TU184860 other downstream 99591 21744876 ~ 21745453 (-) True G146938
TU184470 other downstream 1234401 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1565298 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1821537 20020710 ~ 20023507 (-) False AMCG00005256
TU185079 other upstream 109604 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 169394 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 175164 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 222286 22083717 ~ 22084944 (-) True G147108
TU185123 other upstream 266476 22127907 ~ 22130549 (-) True G147121

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000051_02966203_03000592.mRNA True 5936 mRNA 0.49 24 CI01000051 2964171 ~ 3000592 (-)