RNA id: AMCG00005347


Basic Information

Item Value
RNA id AMCG00005347
length 699
RNA type mRNA
GC content 0.67
exon number 3
gene id AMCG00005347
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 21838826 ~ 21841316 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGCGGACCCTCGAGCACTCCTACCCCCAGATCTACCTGGTGGACAGGGGGGGGCCAGACCATCCTTCCTCACACCCCAATCTCGTGCCCACCTGGCCGGTGCTGCCCCCCCCGGCGCAGCGGAGGCGGGGGGCTGGCCAGGGCTGCGTGGCCACGTTGGTCAtcgtgctgctgctgctggtccTGGTGGCACTGGGCTTCGGCGCCTACCAGCTCCTGAGGCTGCAGGAGGAACTGCTGCTCATGAAGCAGGGCCCTGCTTCGAGGACAGCGCCAGTGGTGCAGAAGCAAGTGGTGCTGAACGTGACGTCGGGGTCCCACACGCTGCAGTGGGAGCCGATCAGGGGCCCCGCCTTCACCTCGGGGCTGGAGTACTGGGACGGGGCTCTGGTCATCAACGAGACGGGGCCCTACTTCGTGTACTCGCAGGTGGCGTTCCGTGGACACGTGTGCCCCACCCGAGGCAGCGTCCTGACCCACACTGTGTTCCGGCAGCGGGGCAACCCCACACCCATCGTCCTGCTGCAGGGCCACCAAAGGGGCTTCTGCACCCAGAGCGGGCCCTGGACCTGCACCAGCTACCTGGGGGGggtggtggagctgcgcaggcTGGACCGGCTCTACGTCAGCGTGTCCGACCCCAGCGCGGTCATGATGGACCACTTCTCCACCTACTTCGGCCTCTACAAGGTCTGA

Function

GO: NA

KEGG:

id description
K04389 TNFSF6, FASL, CD178; tumor necrosis factor ligand superfamily member 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184873 lncRNA downstream 31520 21806980 ~ 21807306 (-) True G146951
TU184859 lncRNA downstream 93018 21745544 ~ 21745808 (-) False AMCG00005343
TU184798 lncRNA downstream 232291 21589996 ~ 21606535 (-) True G146891
TU184761 lncRNA downstream 277365 21560049 ~ 21561461 (-) True G146857
TU184738 lncRNA downstream 351115 21485949 ~ 21487711 (-) True AMCG00005333
TU185082 lncRNA upstream 140742 21982058 ~ 21982521 (-) False AMCG00005363
TU185126 lncRNA upstream 290950 22132266 ~ 22180932 (-) True G147122
TU185169 lncRNA upstream 387883 22229199 ~ 22229991 (-) True G147156
TU185197 lncRNA upstream 581673 22422989 ~ 22423230 (-) True G147184
TU185198 lncRNA upstream 584409 22425725 ~ 22426106 (-) True G147185
AMCG00005343 mRNA downstream 91028 21745574 ~ 21747798 (-) True AMCG00005343
AMCG00005342 mRNA downstream 94928 21740519 ~ 21743898 (-) True AMCG00005342
AMCG00005341 mRNA downstream 121365 21710505 ~ 21717461 (-) True AMCG00005341
AMCG00005323 mRNA downstream 158343 21677408 ~ 21680483 (-) True AMCG00005323
AMCG00005320 mRNA downstream 162990 21668543 ~ 21675836 (-) True AMCG00005320
AMCG00005346 mRNA upstream 3728 21845044 ~ 21861431 (-) True AMCG00005346
AMCG00005355 mRNA upstream 49998 21891314 ~ 21910286 (-) True AMCG00005355
AMCG00005354 mRNA upstream 70563 21911879 ~ 21916299 (-) True AMCG00005354
AMCG00005353 mRNA upstream 96132 21937448 ~ 21956941 (-) True AMCG00005353
AMCG00005352 mRNA upstream 118278 21959594 ~ 21960501 (-) True AMCG00005352
TU184860 other downstream 93373 21744876 ~ 21745453 (-) True G146938
TU184470 other downstream 1228183 20609354 ~ 20610643 (-) True G146618
TU184357 other downstream 1559080 20274391 ~ 20279746 (-) True G146532
TU184245 other downstream 1815319 20020710 ~ 20023507 (-) False AMCG00005256
TU185079 other upstream 129719 21971035 ~ 21982521 (-) True AMCG00005363
TU185101 other upstream 189509 22030825 ~ 22035272 (-) False AMCG00005362
TU185105 other upstream 195279 22036595 ~ 22101862 (-) True G147109
TU185104 other upstream 242401 22083717 ~ 22084944 (-) True G147108
TU185123 other upstream 286591 22127907 ~ 22130549 (-) True G147121

Expression Profile